Co-expression analysis

Gene ID At3g59700
Gene name ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE)
Module size 5 genes
NF 0.12
%ile 8.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2522.61.00At3g59700825139ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE)member of Receptor kinase-like protein familyO.I.H.G.S.X.
0.2319.30.77At4g23190828418CRK11 (CYSTEINE-RICH RLK11)Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)O.I.H.G.S.X.
0.1912.70.81At4g31550829282WRKY11member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.O.I.H.G.S.X.
0.082.30.74At2g26530817194AR781unknown functionO.I.H.G.S.X.
0.061.40.74At5g46780834721VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
328.1100.0E-ATMX-35-raw-cel-1574334800
222.5100.0E-ATMX-35-raw-cel-1574334816
195.5100.0E-ATMX-35-raw-cel-1574334832
115.899.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
98.699.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
94.099.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
93.799.9E-MEXP-807-raw-cel-1173273252
93.499.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
91.699.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
89.099.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
89.099.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
88.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
88.299.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
83.399.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
82.199.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
78.199.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
69.399.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
63.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
62.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
60.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
59.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
56.799.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
56.699.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
55.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.899.8E-MEXP-807-raw-cel-1173273144
45.599.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
41.799.8GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
31.999.7GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
31.199.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.599.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.099.6GSM39212RRE2_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
19.799.6E-ATMX-35-raw-cel-1574334880
16.799.5GSM39195RRE1_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
16.699.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.499.5GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
16.299.5E-NASC-76-raw-cel-1359879132
15.899.5GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
15.299.4GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutantsLink to GEO
14.899.4GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
14.499.4E-ATMX-35-raw-cel-1574334848
13.899.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.699.4GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
12.799.3GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
10.799.2GSM39205Col_Chitin3GSE2169rre1 and rre2 mutantsLink to GEO
10.099.2GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.899.1GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
9.899.1E-ATMX-33-raw-cel-1562596174
9.799.1GSM39214RRE2_Chitin4GSE2169rre1 and rre2 mutantsLink to GEO
9.099.1GSM39204Col_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
8.899.0GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutantsLink to GEO
8.699.0E-MEXP-98-raw-cel-320188749

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0651GO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.Link to AmiGO
0.0151GO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.Link to AmiGO
0.0131GO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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