Co-expression analysis

Gene ID At3g59530
Gene name strictosidine synthase family protein
Module size 43 genes
NF 0.85
%ile 96.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7486.11.00At3g59530825122strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, pollen exine formation;C:endomembrane system;BPMOFAO.I.H.G.S.X.
0.9897.80.75At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.O.I.H.G.S.X.
0.9897.80.77At1g69500843283electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAVO.I.H.G.S.X.
0.9797.60.76At3g07450819933protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9797.60.75At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.O.I.H.G.S.X.
0.9797.60.75At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9797.60.76At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFO.I.H.G.S.X.
0.9697.30.72At3g11980820372MS2 (MALE STERILITY 2)Similar to fatty acid reductases.O.I.H.G.S.X.
0.9697.30.79At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVO.I.H.G.S.X.
0.9697.30.76At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POO.I.H.G.S.X.
0.9597.00.73At1g75030843841ATLP-3encodes a PR5-like proteinO.I.H.G.S.X.
0.9597.00.72At3g52130824377protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9597.00.77At4g35420829695dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAVO.I.H.G.S.X.
0.9597.00.79At5g16920831555-F:molecular_function unknown;P:unknown;C:endomembrane system;POO.I.H.G.S.X.
0.9496.70.72At1g01280839470CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2)member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).O.I.H.G.S.X.
0.9496.70.77At1g02050839280chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOFO.I.H.G.S.X.
0.9496.70.75At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.H.G.S.X.
0.9396.40.76At5g07230830614protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9396.40.77At5g62320836353ATMYB99 (MYB DOMAIN PROTEIN 99)Encodes a putative transcription factor (MYB99).O.I.H.G.S.X.
0.9296.00.73At4g29980829121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9296.00.77At3g57620824931glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOMO.I.H.G.S.X.
0.9296.00.75At5g62080836328protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9296.00.78At1g02813839360unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.9095.10.72At2g42940818895DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.9095.10.70At4g16270827322peroxidase 40 (PER40) (P40)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.H.G.S.X.
0.8994.60.79At1g68540843183oxidoreductase family proteinF:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAVO.I.H.G.S.X.
0.8391.40.77At5g13380831179auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFO.I.H.G.S.X.
0.8391.40.83At1g75790843912sks18 (SKU5 Similar 18)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.8190.40.77At1g06170837126basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOO.I.H.G.S.X.
0.8089.80.77At4g28395828956ATA7related to lipid transfer proteinsO.I.H.G.S.X.
0.7989.10.74At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)O.I.H.G.S.X.
0.7989.10.70At1g03390838725transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFBO.I.H.G.S.X.
0.7888.60.78At3g52160824381KCS15 (3-KETOACYL-COA SYNTHASE 15)Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.H.G.S.X.
0.7788.00.74At5g16960831559NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPAO.I.H.G.S.X.
0.7586.90.73At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.O.I.H.G.S.X.
0.7486.10.77At1g71160843456KCS7 (3-KETOACYL-COA SYNTHASE 7)Encodes KCS7, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.H.G.S.X.
0.7486.10.74At1g30020839881unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7284.80.74At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.H.G.S.X.
0.7083.50.76At1g13140837871CYP86C3member of CYP86CO.I.H.G.S.X.
0.7083.50.73At5g48210834874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6781.60.76At2g03740814901late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFAO.I.H.G.S.X.
0.6781.60.77At4g14815827138protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.H.G.S.X.
0.6478.90.75At3g06100819783NIP7F:water channel activity;P:transport;C:membrane;BPMOFAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.799.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.499.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.099.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.899.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.799.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.599.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.299.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.399.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.199.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.399.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.199.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.699.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.699.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.599.6E-MEXP-807-raw-cel-1173273144
18.799.5GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.199.5GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.799.4GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.099.4E-MEXP-807-raw-cel-1173273060
11.199.2E-MEXP-807-raw-cel-1173273170
10.899.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
10.799.2GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.799.2E-MEXP-807-raw-cel-1173273116
10.399.2GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.799.1GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.699.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.399.1GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
8.999.0E-MEXP-807-raw-cel-1173273252

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.3169GO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.Link to AmiGO
0.1303GO:0080110The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer.Link to AmiGO
0.0892GO:0080088The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.029100130Ubiquinone and other terpenoid-quinone biosynthesisLink to KEGG PATHWAY
0.028200940Phenylpropanoid biosynthesisLink to KEGG PATHWAY
0.016100360Phenylalanine metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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