Co-expression analysis

Gene ID At3g53150
Gene name UGT73D1 (UDP-glucosyl transferase 73D1)
Module size 5 genes
NF 0.12
%ile 8.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.3235.71.00At3g53150824481UGT73D1 (UDP-glucosyl transferase 73D1)F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.H.G.S.X.
0.2217.50.64At1g74590843799GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.2115.80.67At5g13080831147WRKY75WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.O.I.H.G.S.X.
0.071.90.66At3g11340820307UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.H.G.S.X.
0.040.90.66At5g11920831065AtcwINV6 (6-&1-fructan exohydrolase)Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
142.799.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
92.899.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
84.799.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
84.599.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
82.999.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
53.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.999.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.499.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.199.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.999.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.999.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.399.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.499.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.199.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.599.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.699.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
20.599.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.999.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.099.5E-MEXP-807-raw-cel-1173273170
18.399.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.099.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.599.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.599.3GSM184918Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.899.2GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.099.2GSM133973Birnbaum_1-3_src5-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
9.399.1GSM131147AtGen_B-33_3-5-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
8.799.0E-MEXP-807-raw-cel-1173273223

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.3331GO:0032107Any process that modulates the frequency, rate or extent of a response to nutrient levels.Link to AmiGO
0.3331GO:0043620Modulation of the frequency, rate or extent of transcription as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).Link to AmiGO
0.0711GO:0048527The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the rice gene, Os12g0468100, orthologous to the query gene, At3g53150

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.6Os12g0468100---5e+0At4g40060ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16)O.I.H.G.S.X.
0.6887.5Os06g0661000--Plant MuDR transposase domain containing protein6e+0At5g67390unknown proteinO.I.H.G.S.X.
0.5371.3Os11g0238700--Disease resistance protein family protein7e-2At1g50870F-box family proteinO.I.H.G.S.X.
0.5371.3Os05g0324400--Hypothetical protein3e-1At2g02026unknown proteinO.I.H.G.S.X.
0.5068.0Os03g0846300---2e+0At2g45695-O.I.H.G.S.X.
0.4964.4Os06g0179800--Leucine-rich repeat, typical subtype containingprotein2e+0At2g18250ATCOAD (4-phosphopantetheine adenylyltransferase)O.I.H.G.S.X.
0.4762.3Os01g0818800--Hypothetical protein2e+0At5g39600unknown proteinO.I.H.G.S.X.
0.4762.3Os12g0297100---4e+0At5g48510speckle-type POZ protein-relatedO.I.H.G.S.X.
0.4660.9Os01g0975601---7e-1At4g30670unknown proteinO.I.H.G.S.X.
0.4558.8Os09g0565900--Hypothetical protein6e+0At4g29880protein bindingO.I.H.G.S.X.
0.4558.8Os05g0532300---3e+0At5g59950RNA and export factor-binding protein, putativeO.I.H.G.S.X.
0.4558.8Os05g0468400--Galactose oxidase, central domain containingprotein6e-2At1g55140RNA binding / ribonuclease IIIO.I.H.G.S.X.
0.4558.8Os01g0774400---3e+0At1g47655Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.4458.1Os10g0398000---4e+0At5g40970unknown proteinO.I.H.G.S.X.
0.4458.1Os01g0628000--Cytochrome P450 family protein4e-1At1g54410dehydrin family proteinO.I.H.G.S.X.
0.4355.4Os05g0490600--OSMYB51e-5At3g13540ATMYB5 (MYB DOMAIN PROTEIN 5)O.I.H.G.S.X.
0.4253.9Os10g0384300---3e+0At5g13900protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4152.4Os01g0391000---7e+0At5g46730glycine-rich proteinO.I.H.G.S.X.
0.4051.1Os04g0635600--Conserved hypothetical protein5e+0At5g24580copper-binding family proteinO.I.H.G.S.X.
0.3948.3Os01g0273200---5e-3At5g38700unknown proteinO.I.H.G.S.X.
0.3846.9Os07g0190033---6e+0At5g06210RNA-binding protein, putativeO.I.H.G.S.X.
0.3440.0Os02g0257900---3e+0At1g70030paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.3338.8Os01g0179800--TMS membrane protein/tumour differentiallyexpressed protein family protein6e-2At4g13345MEE55 (maternal effect embryo arrest 55)O.I.H.G.S.X.
0.3338.8Os03g0311200---7e-1At1g55240unknown proteinO.I.H.G.S.X.
0.3236.3Os11g0105600--Hypothetical protein7e-1At5g35330MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)O.I.H.G.S.X.
0.3236.3Os01g0328832---1e+0At3g60090VQ motif-containing proteinO.I.H.G.S.X.
0.3134.5Os04g0379001---8e-1At3g25727unknown proteinO.I.H.G.S.X.
0.3032.7Os04g0202700--Conserved hypothetical protein8e-2At3g55450protein kinase, putativeO.I.H.G.S.X.
0.3032.7Os09g0357200---5e+0At5g67500VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)O.I.H.G.S.X.
0.3032.7Os04g0327300---7e-1At1g75860unknown proteinO.I.H.G.S.X.
0.2931.1Os11g0271000--Hypothetical protein3e+0At1g16022unknown proteinO.I.H.G.S.X.
0.2931.1Os04g0297900---1e+0At4g11190disease resistance-responsive family protein / dirigent family proteinO.I.H.G.S.X.
0.2831.1Os12g0191700---1e+1At3g63095-O.I.H.G.S.X.
0.2831.1Os10g0453100---3e+0At2g39400hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2727.5Os03g0176800--Conserved hypothetical protein4e+0At4g28150unknown proteinO.I.H.G.S.X.
0.2625.6Os01g0390500---4e+0At5g64340SAC51 (SUPPRESSOR OF ACAULIS 51)O.I.H.G.S.X.
0.2524.1Os06g0479800---3e+0At5g37415sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.2422.4Os02g0157200--Leucine-rich repeat, plant specific containingprotein1e+0At5g61240protein bindingO.I.H.G.S.X.
0.2321.2Os03g0667400--Conserved hypothetical protein5e-10At1g31260ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)O.I.H.G.S.X.
0.2219.4Os06g0560900---8e-2At4g09660-O.I.H.G.S.X.
0.2219.4Os12g0595300--Cyclin-like F-box domain containing protein1e+0At2g35270DNA-binding protein-relatedO.I.H.G.S.X.
0.2117.9Os02g0513300---3e+0At5g65165SDH2-3O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage