CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g50860

Gene name clathrin adaptor complex small chain family protein

Module size 5 genes

NF 0.10

%ile 6.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At3g50860 824250 clathrin adaptor complex small chain family protein F:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOP O.I. H.G. S.X.
0.40 50.8 0.94 At1g69980 843335 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.21 15.8 0.93 At1g29990 839878 PDF6 (PREFOLDIN 6) Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins. O.I. H.G. S.X.
0.18 11.4 0.93 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. O.I. H.G. S.X.
0.03 0.6 0.93 At1g22300 838837 GRF10 (GENERAL REGULATORY FACTOR 10) Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At3g50860	824250	clathrin adaptor complex small chain family protein	F:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOP	O.I.	H.G.	S.X.
0.40	50.8	0.94	At1g69980	843335	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.21	15.8	0.93	At1g29990	839878	PDF6 (PREFOLDIN 6)	Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.	O.I.	H.G.	S.X.
0.18	11.4	0.93	At3g54840	824649	ARA6	Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.	O.I.	H.G.	S.X.
0.03	0.6	0.93	At1g22300	838837	GRF10 (GENERAL REGULATORY FACTOR 10)	Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
83.4 99.9 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
72.2 99.9 E-ATMX-1-raw-cel-1112746095
60.7 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.1 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.3 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.0 99.8 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
52.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.7 99.8 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
46.3 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.7 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.1 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.1 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.9 99.8 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
38.1 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
37.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.1 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.4 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.3 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.1 99.7 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
33.0 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.5 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.4 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.4 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.2 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.2 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.8 99.7 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
30.7 99.7 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
30.2 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.0 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.7 99.7 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
27.6 99.7 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
27.2 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.1 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.6 99.7 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.3 99.6 GSM134303 Penfield_1-5_endosperm-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.7 99.6 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.6 99.6 GSM134305 Penfield_1-7_endosperm-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
23.7 99.6 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
23.4 99.6 GSM134307 Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
22.9 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.4 99.6 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
21.5 99.6 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
20.2 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.6 99.5 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
17.1 99.5 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.6 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.3 99.4 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
15.0 99.4 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
15.0 99.4 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.8 99.4 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
14.5 99.4 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
14.3 99.4 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.3 99.4 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
13.6 99.4 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
13.4 99.4 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.4 99.3 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.9 99.3 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
11.6 99.3 GSM133305 RIKEN-NAKABAYASHI2A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
11.6 99.3 E-MEXP-1138-raw-cel-1432772554
11.6 99.3 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
11.4 99.3 E-MEXP-1138-raw-cel-1432772682
11.4 99.3 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
11.0 99.2 GSM142656 MC002_ATH1_A12.1-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.8 99.2 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.4 99.2 E-MEXP-1607-raw-cel-1620685834
10.2 99.2 E-MEXP-1607-raw-cel-1620685818
10.0 99.2 E-MEXP-1607-raw-cel-1620685826
9.9 99.1 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.7 99.1 GSM142639 MC002_ATH1_A6.2-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.5 99.1 E-MEXP-1138-raw-cel-1432772650
9.3 99.1 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.1 99.1 E-MEXP-1138-raw-cel-1432772906
9.0 99.1 GSM173623 Col-0 rep2 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
8.8 99.0 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
8.8 99.0 GSM142657 MC002_ATH1_A12.2-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.8 99.0 GSM142658 MC002_ATH1_A12.3-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.7 99.0 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.7 99.0 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
83.4	99.9	GSM133760	Lindsey_1-12_heart-stage-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
72.2	99.9	E-ATMX-1-raw-cel-1112746095
60.7	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.1	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
57.3	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
55.0	99.8	GSM311291	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
52.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
50.7	99.8	GSM134301	Penfield_1-3_endosperm-control_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
46.3	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.7	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.6	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.6	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.1	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.1	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.9	99.8	GSM134304	Penfield_1-6_endosperm-ABA_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
38.1	99.8	GSM134300	Penfield_1-2_endosperm-control_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
37.8	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.1	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.4	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.3	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.1	99.7	GSM311279	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
33.0	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.5	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.4	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.4	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.2	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.2	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.8	99.7	GSM311276	Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
30.7	99.7	GSM134299	Penfield_1-1_endosperm-control_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
30.2	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.0	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.7	99.7	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
27.6	99.7	GSM311292	Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
27.2	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.1	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.6	99.7	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.3	99.6	GSM134303	Penfield_1-5_endosperm-ABA_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.7	99.6	GSM134306	Penfield_1-8_endosperm-PAC_Rep2_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
24.6	99.6	GSM134305	Penfield_1-7_endosperm-PAC_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
23.7	99.6	GSM134302	Penfield_1-4_endosperm-ABA_Rep1_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
23.4	99.6	GSM134307	Penfield_1-9_endosperm-PAC_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
22.9	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
22.4	99.6	GSM184845	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
21.5	99.6	GSM311280	Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
20.2	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.6	99.5	GSM133308	RIKEN-NAKABAYASHI4A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
17.1	99.5	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.6	99.5	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.3	99.4	GSM133306	RIKEN-NAKABAYASHI2B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
15.0	99.4	GSM311275	Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
15.0	99.4	GSM226541	L11SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.8	99.4	GSM133310	RIKEN-NAKABAYASHI5B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
14.5	99.4	GSM133309	RIKEN-NAKABAYASHI4B	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
14.3	99.4	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.3	99.4	GSM184900	Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
13.6	99.4	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
13.4	99.4	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.4	99.3	GSM133307	RIKEN-NAKABAYASHI3A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
11.9	99.3	GSM184918	Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.6	99.3	GSM133305	RIKEN-NAKABAYASHI2A	GSE5700	AtGenExpress: Effect of ABA during seed imbibition
11.6	99.3	E-MEXP-1138-raw-cel-1432772554
11.6	99.3	GSM311278	Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
11.4	99.3	E-MEXP-1138-raw-cel-1432772682
11.4	99.3	GSM184838	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8	GSE7639	Expression analysis of root developmental zones after treatment with salt
11.0	99.2	GSM142656	MC002_ATH1_A12.1-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.8	99.2	GSM226554	Slice12JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
10.4	99.2	E-MEXP-1607-raw-cel-1620685834
10.2	99.2	E-MEXP-1607-raw-cel-1620685818
10.0	99.2	E-MEXP-1607-raw-cel-1620685826
9.9	99.1	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.7	99.1	GSM142639	MC002_ATH1_A6.2-dubos-5kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.5	99.1	E-MEXP-1138-raw-cel-1432772650
9.3	99.1	GSM142642	MC002_ATH1_A7.2-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.1	99.1	E-MEXP-1138-raw-cel-1432772906
9.0	99.1	GSM173623	Col-0 rep2	GSE7227	microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
8.8	99.0	GSM184924	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
8.8	99.0	GSM142657	MC002_ATH1_A12.2-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.8	99.0	GSM142658	MC002_ATH1_A12.3-dubos-arh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.7	99.0	GSM142633	MC002_ATH1_A4.2-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
8.7	99.0	GSM142643	MC002_ATH1_A7.3-dubos-wLh	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.333 1 GO:0045022 The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs.
0.143 1 GO:0043622 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell.
0.065 1 GO:0009742 A series of molecular signals mediated by the detection of brassinosteroid.

SF	Genes	GO ID	Process Name
0.333	1	GO:0045022	The directed movement of substances, in membrane-bounded vesicles, from the early sorting endosomes to the late sorting endosomes; transport occurs along microtubules and can be experimentally blocked with microtubule-depolymerizing drugs.
0.143	1	GO:0043622	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell.
0.065	1	GO:0009742	A series of molecular signals mediated by the detection of brassinosteroid.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At3g50860
Gene name	clathrin adaptor complex small chain family protein
Module size	5 genes
NF	0.10
%ile	6.3

Co-expression analysis

Gene ID At3g50860 Gene name clathrin adaptor complex small chain family protein Module size 5 genes NF 0.10 %ile 6.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g50860

Gene name clathrin adaptor complex small chain family protein

Module size 5 genes

NF 0.10

%ile 6.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays