Co-expression analysis

Gene ID At3g50410
Gene name OBP1 (OBF BINDING PROTEIN 1)
Module size 6 genes
NF 0.15
%ile 11.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g50410824205OBP1 (OBF BINDING PROTEIN 1)Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.O.I.H.G.S.X.
0.3338.10.73At3g60660825237unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.2014.40.74At1g20410838630unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OAMPFO.I.H.G.S.X.
0.103.40.73At1g33410840234SAR1 (suppressor of auxin resistance1)F:unknown;P:response to auxin stimulus, mRNA export from nucleus, developmental process;C:nuclear membrane;MPFOO.I.H.G.S.X.
0.061.40.74At2g33620817928DNA-binding family protein / AT-hook protein 1 (AHP1)F:DNA binding;P:unknown;C:cytosol;PBMOO.I.H.G.S.X.
0.051.10.73At5g12220831096las1-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
99.099.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
96.099.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
92.199.9GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
78.599.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
63.799.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
43.199.8GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
38.099.8GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
33.899.7E-MEXP-285-raw-cel-440782725
33.799.7GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
33.699.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
31.099.7GSM156791albino rep1GSE6788Expression data of an albino mutant DS 13-2198-1Link to GEO
29.599.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
28.499.7E-MEXP-285-raw-cel-440782791
26.899.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
26.599.7E-MEXP-509-raw-cel-829148561
26.499.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
25.099.6GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
24.799.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.399.6GSM156790control rep1GSE6788Expression data of an albino mutant DS 13-2198-1Link to GEO
23.699.6E-MEXP-1138-raw-cel-1432773162
21.499.6GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
20.399.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
20.299.6GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
19.299.6E-MEXP-1138-raw-cel-1432773194
18.599.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.299.5E-MEXP-1138-raw-cel-1432772714
18.099.5E-MEXP-1138-raw-cel-1432772682
17.899.5GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
17.599.5E-MEXP-1138-raw-cel-1432773354
17.299.5E-MEXP-1138-raw-cel-1432772522
16.599.5E-MEXP-1138-raw-cel-1432772650
16.499.5GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.499.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.499.5E-MEXP-509-raw-cel-829148201
16.399.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.399.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5E-MEXP-1138-raw-cel-1432773130
15.799.5E-MEXP-1138-raw-cel-1432772554
15.799.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.499.5GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.299.4E-MEXP-1138-raw-cel-1432773098
14.699.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.399.4GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.299.4GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.199.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.899.4GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.899.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.899.4E-MEXP-1138-raw-cel-1432773002
13.599.4E-MEXP-1138-raw-cel-1432773226
13.599.4GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.399.4E-MEXP-509-raw-cel-829148525
13.099.4GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.999.3GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.499.3E-MEXP-1138-raw-cel-1432772586
12.399.3GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.599.3E-MEXP-1138-raw-cel-1432772970
11.499.3GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.899.2E-MEXP-509-raw-cel-829148090
10.499.2E-MEXP-1138-raw-cel-1432772618
10.299.2E-MEXP-1138-raw-cel-1432772746
10.099.2E-MEXP-509-raw-cel-829148456
9.799.1GSM156793albino rep2GSE6788Expression data of an albino mutant DS 13-2198-1Link to GEO
9.499.1E-MEXP-509-raw-cel-829148385
9.199.1E-MEXP-1138-raw-cel-1432773386
9.099.1E-ATMX-1-raw-cel-1112746095
9.099.1E-MEXP-509-raw-cel-829148772
9.099.1E-MEXP-1138-raw-cel-1432772778
8.699.0E-MEXP-509-raw-cel-829148597

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0006406The directed movement of mRNA from the nucleus to the cytoplasm.Link to AmiGO
0.2221GO:0045787Any process that activates or increases the rate or extent of progression through the cell cycle.Link to AmiGO
0.0451GO:0045941Any process that activates or increases the frequency, rate or extent of transcription.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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