Co-expression analysis

Gene ID At3g49220
Gene name pectinesterase family protein
Module size 6 genes
NF 0.16
%ile 13.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.9195.61.00At3g49220824083pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.
0.3338.10.82At4g27720828886-F:unknown;P:unknown;C:plasma membrane;BPMOFAO.I.H.G.S.X.
0.3133.80.83At5g09870830847CESA5 (CELLULOSE SYNTHASE 5)Encodes a cellulose synthase isomer, related to CESA6.O.I.H.G.S.X.
0.2420.70.82At3g23820821965GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6)UDP-D-glucuronate 4-epimeraseO.I.H.G.S.X.
0.051.10.82At1g70370843373BURP domain-containing protein / polygalacturonase, putativeF:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OBMPFAVO.I.H.G.S.X.
0.030.60.83At1g01540839533protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
103.499.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
101.199.9GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
53.099.8GSM339544Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -6GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
51.699.8GSM184481Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
40.499.8GSM339542Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -4GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
33.299.7GSM339540Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -2GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
29.799.7E-ATMX-32-raw-cel-1562974527
28.299.7E-MEXP-449-raw-cel-676423253
26.699.7GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
26.099.7GSM184482Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.899.6GSM339546Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -8GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
22.199.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.199.6GSM339548Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -10GSE13469Environmental regulation of leaf colour in red 35S:PAP1 ArabidopsisLink to GEO
21.299.6GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.099.6E-MEXP-449-raw-cel-676423218
20.199.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.699.5GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
18.399.5GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.199.5GSM269815T6 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
17.799.5GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.699.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
17.399.5E-ATMX-32-raw-cel-1562974409
17.299.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.499.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
16.399.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.899.5GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
15.299.4GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.199.4GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
15.099.4GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
14.699.4GSM133735Buchanan-Wollaston_A-7-bwoll-Ei1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
14.499.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.199.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.099.4GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.099.4GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.999.4GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.699.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.699.4GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.599.4GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.399.4GSM157329Coates_1-1_Col-0_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in ArabidopsisLink to GEO
13.399.4GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
13.199.4GSM133319RIKEN-LI5AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
12.899.3GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.799.3GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.599.3GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
12.399.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
12.399.3GSM133305RIKEN-NAKABAYASHI2AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
12.199.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.599.3GSM133313RIKEN-LI2AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
11.299.2GSM269817T8 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
11.199.2GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
11.199.2GSM133736Buchanan-Wollaston_A-8-bwoll-Ei2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
11.099.2GSM133315RIKEN-LI3AGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
10.899.2GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.799.2E-TABM-209-raw-cel-1316546503
10.099.2GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.099.2GSM133312RIKEN-LI1BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
10.099.2GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescenceLink to GEO
10.099.2GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.099.2GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.999.1GSM151705gh3.5-1D 48 hpi, biological replicate 3GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
9.499.1GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
9.099.1GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
8.999.0GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
8.999.0GSM268251WT-drought-2, biological rep 2GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
8.999.0GSM151703gh3.5-1D 48 hpi, biological replicate 1GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
8.899.0GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
8.899.0GSM260955A2-LLOYD-PHO_REP2GSE10326Transcriptome analysis of pho3Link to GEO
8.799.0E-ATMX-32-raw-cel-1562974621
8.799.0GSM133316RIKEN-LI3BGSE5701AtGenExpress: Basic hormone treatment of seedsLink to GEO
8.799.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
8.699.0GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0771GO:0009225The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.Link to AmiGO
0.0611GO:0009832The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0421GO:0044237The chemical reactions and pathways by which individual cells transform chemical substances.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.026100520Amino sugar and nucleotide sugar metabolismLink to KEGG PATHWAY
0.022100500Starch and sucrose metabolismLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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