CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g48450

Gene name nitrate-responsive NOI protein, putative

Module size 50 genes

NF 0.45

%ile 63.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At3g48450 824004 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO O.I. H.G. S.X.
0.73 85.5 0.91 At3g13660 820570 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;P O.I. H.G. S.X.
0.68 82.2 0.89 At2g46360 819243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.60 75.7 0.90 At4g24640 828566 APPB1 Encodes AppB protein (AppB1). O.I. H.G. S.X.
0.56 73.0 0.90 At2g26850 817226 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. H.G. S.X.
0.56 73.0 0.91 At1g51240 841547 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 0.90 At3g26110 822209 - F:molecular_function unknown;P:unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.55 70.6 0.90 At5g46770 834720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 0.89 At2g32460 817807 MYB101 Member of the R2R3 factor gene family. O.I. H.G. S.X.
0.52 67.4 0.89 At3g25165 822108 RALFL25 (ralf-like 25) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. H.G. S.X.
0.51 66.3 0.90 At3g26860 822302 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.50 65.3 0.92 At5g01610 831718 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.49 63.5 0.90 At4g25780 828683 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. H.G. S.X.
0.48 62.5 0.90 At4g20160 827762 - F:unknown;P:unknown;C:chloroplast;MOFBPVA O.I. H.G. S.X.
0.47 61.2 0.89 At3g25170 822109 RALFL26 (ralf-like 26) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. H.G. S.X.
0.47 61.2 0.89 At3g21570 821711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.46 59.8 0.91 At2g45310 819139 GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4) UDP-D-glucuronate 4-epimerase O.I. H.G. S.X.
0.46 59.8 0.90 At4g27580 828867 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, cell wall;OBMFPVA O.I. H.G. S.X.
0.45 58.3 0.91 At2g33460 817911 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. O.I. H.G. S.X.
0.45 58.3 0.89 At3g16040 820849 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.45 58.3 0.91 At1g70790 843416 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.45 58.3 0.89 At4g04980 825839 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA O.I. H.G. S.X.
0.44 57.2 0.90 At3g19310 821465 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM O.I. H.G. S.X.
0.44 57.2 0.90 At4g28280 828943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.44 57.2 0.89 At5g58170 835929 SVL5 (SHV3-LIKE 5) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF O.I. H.G. S.X.
0.43 55.3 0.89 At5g25340 832606 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.43 55.3 0.89 At5g54095 835496 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMFPVA O.I. H.G. S.X.
0.43 55.3 0.90 At1g47280 841131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.43 55.3 0.89 At1g04540 839498 C2 domain-containing protein F:unknown;P:biological_process unknown;C:membrane;PMOFB O.I. H.G. S.X.
0.43 55.3 0.89 At2g13350 815821 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. H.G. S.X.
0.43 55.3 0.89 At2g45800 819188 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF O.I. H.G. S.X.
0.43 55.3 0.89 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA O.I. H.G. S.X.
0.43 55.3 0.89 At5g58050 835917 SVL4 (SHV3-LIKE 4) F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF O.I. H.G. S.X.
0.42 53.9 0.89 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.42 53.9 0.89 At3g17060 820963 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. H.G. S.X.
0.42 53.9 0.89 At3g43120 823371 auxin-responsive protein-related F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. H.G. S.X.
0.42 53.9 0.89 At3g52000 824363 scpl36 (serine carboxypeptidase-like 36) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. H.G. S.X.
0.42 53.9 0.90 At4g34440 829595 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA O.I. H.G. S.X.
0.42 53.9 0.89 At2g33270 817890 ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) Encodes a member of the thioredoxin family protein. Located in the chloroplast. O.I. H.G. S.X.
0.41 52.4 0.89 At2g02140 814745 LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. H.G. S.X.
0.40 50.8 0.89 At3g17980 821323 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.40 50.8 0.90 At5g61360 836257 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.40 50.8 0.91 At1g02000 839289 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) UDP-D-glucuronate 4-epimerase O.I. H.G. S.X.
0.40 50.8 0.89 At1g24520 839067 BCP1 Male fertility gene acting on tapetum and microspore O.I. H.G. S.X.
0.40 50.8 0.89 At1g61290 842423 SYP124 (SYNTAXIN OF PLANTS 124) member of SYP12 Gene Family O.I. H.G. S.X.
0.38 46.7 0.89 At1g44160 841019 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. H.G. S.X.
0.38 46.7 0.89 At1g04700 839437 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:cytosol;MPOBFVA O.I. H.G. S.X.
0.37 45.0 0.89 At4g07960 826301 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) encodes a gene similar to cellulose synthase O.I. H.G. S.X.
0.35 41.6 0.89 At4g27350 828843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOPF O.I. H.G. S.X.
0.30 32.1 0.89 At5g57690 835876 diacylglycerol kinase F:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOB O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At3g48450	824004	nitrate-responsive NOI protein, putative	F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.73	85.5	0.91	At3g13660	820570	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.68	82.2	0.89	At2g46360	819243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.60	75.7	0.90	At4g24640	828566	APPB1	Encodes AppB protein (AppB1).	O.I.	H.G.	S.X.
0.56	73.0	0.90	At2g26850	817226	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	H.G.	S.X.
0.56	73.0	0.91	At1g51240	841547	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.55	70.6	0.90	At3g26110	822209	-	F:molecular_function unknown;P:unknown;C:anchored to membrane;P	O.I.	H.G.	S.X.
0.55	70.6	0.90	At5g46770	834720	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	0.89	At2g32460	817807	MYB101	Member of the R2R3 factor gene family.	O.I.	H.G.	S.X.
0.52	67.4	0.89	At3g25165	822108	RALFL25 (ralf-like 25)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	H.G.	S.X.
0.51	66.3	0.90	At3g26860	822302	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.50	65.3	0.92	At5g01610	831718	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.49	63.5	0.90	At4g25780	828683	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	H.G.	S.X.
0.48	62.5	0.90	At4g20160	827762	-	F:unknown;P:unknown;C:chloroplast;MOFBPVA	O.I.	H.G.	S.X.
0.47	61.2	0.89	At3g25170	822109	RALFL26 (ralf-like 26)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	H.G.	S.X.
0.47	61.2	0.89	At3g21570	821711	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.46	59.8	0.91	At2g45310	819139	GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4)	UDP-D-glucuronate 4-epimerase	O.I.	H.G.	S.X.
0.46	59.8	0.90	At4g27580	828867	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, cell wall;OBMFPVA	O.I.	H.G.	S.X.
0.45	58.3	0.91	At2g33460	817911	RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis.	O.I.	H.G.	S.X.
0.45	58.3	0.89	At3g16040	820849	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.45	58.3	0.91	At1g70790	843416	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.45	58.3	0.89	At4g04980	825839	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA	O.I.	H.G.	S.X.
0.44	57.2	0.90	At3g19310	821465	phospholipase C/ phosphoric diester hydrolase	F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM	O.I.	H.G.	S.X.
0.44	57.2	0.90	At4g28280	828943	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	H.G.	S.X.
0.44	57.2	0.89	At5g58170	835929	SVL5 (SHV3-LIKE 5)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF	O.I.	H.G.	S.X.
0.43	55.3	0.89	At5g25340	832606	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.43	55.3	0.89	At5g54095	835496	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMFPVA	O.I.	H.G.	S.X.
0.43	55.3	0.90	At1g47280	841131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.43	55.3	0.89	At1g04540	839498	C2 domain-containing protein	F:unknown;P:biological_process unknown;C:membrane;PMOFB	O.I.	H.G.	S.X.
0.43	55.3	0.89	At2g13350	815821	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	H.G.	S.X.
0.43	55.3	0.89	At2g45800	819188	LIM domain-containing protein	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF	O.I.	H.G.	S.X.
0.43	55.3	0.89	At5g42490	834256	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA	O.I.	H.G.	S.X.
0.43	55.3	0.89	At5g58050	835917	SVL4 (SHV3-LIKE 4)	F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF	O.I.	H.G.	S.X.
0.42	53.9	0.89	At1g17540	838328	kinase	F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	H.G.	S.X.
0.42	53.9	0.89	At3g17060	820963	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	H.G.	S.X.
0.42	53.9	0.89	At3g43120	823371	auxin-responsive protein-related	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.42	53.9	0.89	At3g52000	824363	scpl36 (serine carboxypeptidase-like 36)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	H.G.	S.X.
0.42	53.9	0.90	At4g34440	829595	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA	O.I.	H.G.	S.X.
0.42	53.9	0.89	At2g33270	817890	ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3)	Encodes a member of the thioredoxin family protein. Located in the chloroplast.	O.I.	H.G.	S.X.
0.41	52.4	0.89	At2g02140	814745	LCR72 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 72)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	H.G.	S.X.
0.40	50.8	0.89	At3g17980	821323	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.40	50.8	0.90	At5g61360	836257	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.40	50.8	0.91	At1g02000	839289	GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2)	UDP-D-glucuronate 4-epimerase	O.I.	H.G.	S.X.
0.40	50.8	0.89	At1g24520	839067	BCP1	Male fertility gene acting on tapetum and microspore	O.I.	H.G.	S.X.
0.40	50.8	0.89	At1g61290	842423	SYP124 (SYNTAXIN OF PLANTS 124)	member of SYP12 Gene Family	O.I.	H.G.	S.X.
0.38	46.7	0.89	At1g44160	841019	DNAJ chaperone C-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	H.G.	S.X.
0.38	46.7	0.89	At1g04700	839437	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:cytosol;MPOBFVA	O.I.	H.G.	S.X.
0.37	45.0	0.89	At4g07960	826301	ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)	encodes a gene similar to cellulose synthase	O.I.	H.G.	S.X.
0.35	41.6	0.89	At4g27350	828843	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOPF	O.I.	H.G.	S.X.
0.30	32.1	0.89	At5g57690	835876	diacylglycerol kinase	F:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOB	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.9 99.8 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.8 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.4 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.2 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.5 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.4 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.3 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.1 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.9 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.6 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.1 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.8 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.0 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.6 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.2 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.5 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
24.8 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.3 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.8 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.0 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.9 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.0 99.5 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
11.9 99.3 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
11.8 99.3 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
10.3 99.2 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.2 99.1 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.9 99.0 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
40.9	99.8	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
38.5	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.3	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.8	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.8	99.7	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.7	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.4	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.2	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.5	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.4	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.3	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.1	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.9	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.6	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.1	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.8	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.0	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
28.6	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.9	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.2	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.5	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
24.8	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.3	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.8	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.0	99.5	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.9	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
16.0	99.5	GSM184892	Arabidopsis, root cells, columella root cap, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
11.9	99.3	GSM184912	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
11.8	99.3	GSM184894	Arabidopsis, root cells, columella root cap, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
10.3	99.2	GSM266668	Arabidopsis, root cells, columella root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.2	99.1	GSM311289	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.9	99.0	GSM311290	Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.061 2 GO:0006071 The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
0.057 2 GO:0009225 The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
0.046 2 GO:0007267 Any process that mediates the transfer of information from one cell to another.

SF	Genes	GO ID	Process Name
0.061	2	GO:0006071	The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
0.057	2	GO:0009225	The chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
0.046	2	GO:0007267	Any process that mediates the transfer of information from one cell to another.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.033 2 00520 Amino sugar and nucleotide sugar metabolism
0.030 2 00500 Starch and sucrose metabolism
0.020 1 04130 SNARE interactions in vesicular transport

SF	Genes	KEGG ID	Pathway name
0.033	2	00520	Amino sugar and nucleotide sugar metabolism
0.030	2	00500	Starch and sucrose metabolism
0.020	1	04130	SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At3g48450
Gene name	nitrate-responsive NOI protein, putative
Module size	50 genes
NF	0.45
%ile	63.4

Co-expression analysis

Gene ID At3g48450 Gene name nitrate-responsive NOI protein, putative Module size 50 genes NF 0.45 %ile 63.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.033200520Amino sugar and nucleotide sugar metabolism0.030200500Starch and sucrose metabolism0.020104130SNARE interactions in vesicular transport

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g48450

Gene name nitrate-responsive NOI protein, putative

Module size 50 genes

NF 0.45

%ile 63.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.033 2 00520 Amino sugar and nucleotide sugar metabolism
0.030 2 00500 Starch and sucrose metabolism
0.020 1 04130 SNARE interactions in vesicular transport

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays