CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g42800

Gene name unknown protein

Module size 5 genes

NF 0.59

%ile 80.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.50 65.3 1.00 At3g42800 823322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP O.I. H.G. S.X.
0.89 94.6 0.75 At2g18010 816313 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. H.G. S.X.
0.75 86.9 0.70 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 O.I. H.G. S.X.
0.75 86.9 0.70 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.33 38.1 0.71 At3g03830 821123 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.50	65.3	1.00	At3g42800	823322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP	O.I.	H.G.	S.X.
0.89	94.6	0.75	At2g18010	816313	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	H.G.	S.X.
0.75	86.9	0.70	At3g15540	820793	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	IAA induced protein 19	O.I.	H.G.	S.X.
0.75	86.9	0.70	At4g16515	827350	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.33	38.1	0.71	At3g03830	821123	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
91.2 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.8 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
85.1 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.0 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.7 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
75.6 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
70.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.1 99.9 E-ATMX-1-raw-cel-1112746154
59.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.4 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.8 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.6 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.7 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.1 99.8 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
45.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.6 99.8 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
42.5 99.8 E-MEXP-285-raw-cel-440782725
41.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.4 99.7 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.9 99.7 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
31.8 99.7 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.6 99.7 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.5 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
28.4 99.7 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
26.7 99.7 E-MEXP-285-raw-cel-440782791
24.6 99.6 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.8 99.6 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
23.6 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.8 99.6 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
21.6 99.6 E-MEXP-1138-raw-cel-1432772906
21.0 99.6 E-ATMX-35-raw-cel-1574334880
20.3 99.6 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
19.7 99.6 E-MEXP-1138-raw-cel-1432772938
18.8 99.5 E-ATMX-35-raw-cel-1574334864
18.3 99.5 E-MEXP-1138-raw-cel-1432773066
17.7 99.5 E-MEXP-1138-raw-cel-1432772810
17.6 99.5 E-MEXP-1138-raw-cel-1432773034
16.4 99.5 E-MEXP-1138-raw-cel-1432772842
16.3 99.5 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
16.2 99.5 E-MEXP-1138-raw-cel-1432772714
15.8 99.5 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
15.5 99.5 E-ATMX-1-raw-cel-1112746209
15.4 99.5 E-MEXP-1138-raw-cel-1432772746
15.3 99.4 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.3 99.4 E-MEXP-1138-raw-cel-1432772522
13.7 99.4 E-ATMX-35-raw-cel-1574334848
13.6 99.4 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
13.6 99.4 E-MEXP-1138-raw-cel-1432772874
13.3 99.4 E-MEXP-1138-raw-cel-1432773322
13.2 99.4 E-MEXP-1138-raw-cel-1432772778
13.2 99.4 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
12.2 99.3 E-MEXP-1138-raw-cel-1432772650
11.8 99.3 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
11.6 99.3 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.9 99.2 E-MEXP-1138-raw-cel-1432772586
10.7 99.2 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.7 99.2 E-MEXP-1138-raw-cel-1432773002
10.5 99.2 E-MEXP-1138-raw-cel-1432772682
10.4 99.2 E-MEXP-1138-raw-cel-1432773290
10.2 99.2 E-MEXP-1138-raw-cel-1432773258
10.0 99.2 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.9 99.1 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.8 99.1 GSM184476 Lateral Root Cap root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.7 99.1 E-ATMX-1-raw-cel-1112746267
9.6 99.1 E-MEXP-1138-raw-cel-1432773130
9.1 99.1 E-MEXP-1138-raw-cel-1432773194
8.9 99.0 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.8 99.0 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.8 99.0 E-MEXP-1138-raw-cel-1432773098
8.6 99.0 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
91.2	99.9	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.8	99.9	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
85.1	99.9	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
83.7	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
83.0	99.9	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.1	99.9	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
80.9	99.9	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.7	99.9	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
75.6	99.9	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
70.3	99.9	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.1	99.9	E-ATMX-1-raw-cel-1112746154
59.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.4	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
50.5	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
49.8	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.6	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.3	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.7	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
46.1	99.8	GSM131699	ATGE_81_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
45.8	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.6	99.8	GSM131697	ATGE_81_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
42.5	99.8	E-MEXP-285-raw-cel-440782725
41.7	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.4	99.7	GSM239253	CaMV::DME pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.9	99.7	GSM142740	DH001_ATH1_A7-MPG1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
31.8	99.7	GSM239251	Columbia glabrous (C24) wild type pollen	GSE9408	Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
31.6	99.7	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
28.5	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
28.4	99.7	GSM131698	ATGE_81_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
26.7	99.7	E-MEXP-285-raw-cel-440782791
24.6	99.6	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.8	99.6	GSM131637	ATGE_73_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
23.6	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
22.8	99.6	GSM131638	ATGE_73_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
21.6	99.6	E-MEXP-1138-raw-cel-1432772906
21.0	99.6	E-ATMX-35-raw-cel-1574334880
20.3	99.6	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
19.7	99.6	E-MEXP-1138-raw-cel-1432772938
18.8	99.5	E-ATMX-35-raw-cel-1574334864
18.3	99.5	E-MEXP-1138-raw-cel-1432773066
17.7	99.5	E-MEXP-1138-raw-cel-1432772810
17.6	99.5	E-MEXP-1138-raw-cel-1432773034
16.4	99.5	E-MEXP-1138-raw-cel-1432772842
16.3	99.5	GSM131636	ATGE_73_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
16.2	99.5	E-MEXP-1138-raw-cel-1432772714
15.8	99.5	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
15.5	99.5	E-ATMX-1-raw-cel-1112746209
15.4	99.5	E-MEXP-1138-raw-cel-1432772746
15.3	99.4	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.3	99.4	E-MEXP-1138-raw-cel-1432772522
13.7	99.4	E-ATMX-35-raw-cel-1574334848
13.6	99.4	GSM154505	Arabidopsis hydrated pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
13.6	99.4	E-MEXP-1138-raw-cel-1432772874
13.3	99.4	E-MEXP-1138-raw-cel-1432773322
13.2	99.4	E-MEXP-1138-raw-cel-1432772778
13.2	99.4	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
12.2	99.3	E-MEXP-1138-raw-cel-1432772650
11.8	99.3	GSM75521	slr-1 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
11.6	99.3	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.9	99.2	E-MEXP-1138-raw-cel-1432772586
10.7	99.2	GSM154503	Arabidopsis desiccated mature pollen grains rep1	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.7	99.2	E-MEXP-1138-raw-cel-1432773002
10.5	99.2	E-MEXP-1138-raw-cel-1432772682
10.4	99.2	E-MEXP-1138-raw-cel-1432773290
10.2	99.2	E-MEXP-1138-raw-cel-1432773258
10.0	99.2	GSM133773	Lindsey_1-25_torpedo-meristem_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.9	99.1	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
9.8	99.1	GSM184476	Lateral Root Cap root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.7	99.1	E-ATMX-1-raw-cel-1112746267
9.6	99.1	E-MEXP-1138-raw-cel-1432773130
9.1	99.1	E-MEXP-1138-raw-cel-1432773194
8.9	99.0	GSM131695	ATGE_79_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.8	99.0	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
8.8	99.0	E-MEXP-1138-raw-cel-1432773098
8.6	99.0	GSM131694	ATGE_79_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0080086 The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.
0.105 1 GO:0009638 The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
0.080 1 GO:0009630 The orientation of plant parts under the stimulation of gravity.

SF	Genes	GO ID	Process Name
0.286	1	GO:0080086	The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen.
0.105	1	GO:0009638	The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.
0.080	1	GO:0009630	The orientation of plant parts under the stimulation of gravity.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At3g42800
Gene name	unknown protein
Module size	5 genes
NF	0.59
%ile	80.4

Co-expression analysis

Gene ID At3g42800 Gene name unknown protein Module size 5 genes NF 0.59 %ile 80.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g42800

Gene name unknown protein

Module size 5 genes

NF 0.59

%ile 80.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays