Co-expression analysis

Gene ID At3g42390
Gene name unknown protein
Module size 49 genes
NF 0.66
%ile 86.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g42390823235unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8190.40.96At4g037103769890transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7888.60.97At2g109003768617transposable element genesimilarity to non-LTR retroelement proteinO.I.H.G.S.X.
0.7486.10.97At1g478163767392transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.96At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.96At1g359953766969transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.97At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.96At5g28760832988transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.95At5g47270--O.I.H.G.S.X.
0.6982.90.96At1g35770840482transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.96At2g14570815944transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.96At2g149303768116transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.95At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.96At2g127203768565transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.96At4g045903770515transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.95At1g43970840996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.6882.20.96At2g07740815421transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.96At4g045603769781transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.96At2g11620815635unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.H.G.S.X.
0.6781.60.96At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.95At2g14590815946transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.96At4g03750825677transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.95At1g366003767017transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.96At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.96At3g42120823184transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.96At1g350603766929transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.96At1g417953767198transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.95At1g360403766972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.96At2g075103768270transposable element genepseudogene of Ulp1 protease family proteinO.I.H.G.S.X.
0.6579.60.96At2g07505815323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.60.95At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.96At1g672403767657transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.95At3g42680823288transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.95At2g143503768589transposable element genepseudogene of unknown proteinO.I.H.G.S.X.
0.6478.90.95At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.95At2g13550815841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.6478.90.96At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.95At3g428363769502transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.96At4g075403770365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.95At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.96At3g29080822555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.6478.90.95At3g455203769652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.96At2g11570815630unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.6075.70.95At5g332503771111transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.95At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.95At4g038603770318transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.96At5g29050833041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5673.00.96At1g27870839680nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.5267.40.95At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.199.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.599.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.399.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.899.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.799.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.299.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.399.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.899.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.499.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.199.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.599.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.099.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.599.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.399.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.199.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.799.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.699.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.899.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.799.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.599.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.299.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.199.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.599.4GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
14.499.4GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
13.099.4GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.699.3GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.999.2GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.499.2GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
10.399.2GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.099.2GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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