CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g42130

Gene name glycine-rich protein

Module size 5 genes

NF 0.23

%ile 24.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.40 50.8 1.00 At3g42130 823185 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV O.I. H.G. S.X.
0.25 22.6 0.96 At2g07395 3768424 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.23 19.3 0.90 At2g07673 815345 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.22 17.5 0.93 At3g30845 822868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.21 15.8 0.93 At2g05660 3768558 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.40	50.8	1.00	At3g42130	823185	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV	O.I.	H.G.	S.X.
0.25	22.6	0.96	At2g07395	3768424	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.23	19.3	0.90	At2g07673	815345	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.22	17.5	0.93	At3g30845	822868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.21	15.8	0.93	At2g05660	3768558	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
102.9 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
94.6 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
93.6 99.9 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
90.5 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
90.4 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
78.4 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
58.5 99.8 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
57.6 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
56.0 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
55.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.7 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.3 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.4 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.9 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.9 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.2 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.1 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.7 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.3 99.8 GSM131330 AtGen_6-3622_Saltstress-Roots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
39.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.1 99.8 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
38.1 99.8 E-MEXP-1797-raw-cel-1669767940
37.0 99.7 E-MEXP-1797-raw-cel-1669768030
35.5 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.0 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.8 99.7 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
32.1 99.7 E-MEXP-1797-raw-cel-1669767967
29.8 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.0 99.7 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
28.5 99.7 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
28.5 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
21.4 99.6 E-MEXP-1797-raw-cel-1669767985
21.3 99.6 E-MEXP-1797-raw-cel-1669767958
20.5 99.6 E-MEXP-1797-raw-cel-1669768012
20.4 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.9 99.6 E-MEXP-1797-raw-cel-1669767976
19.5 99.6 GSM134396 St.Clair_1-93_349_Tsu-1_0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
19.3 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.9 99.5 E-MEXP-807-raw-cel-1173272948
18.9 99.5 E-MEXP-1797-raw-cel-1669768021
17.5 99.5 E-MEXP-1797-raw-cel-1669767949
17.3 99.5 E-MEXP-1797-raw-cel-1669768003
17.2 99.5 E-MEXP-1797-raw-cel-1669767994
15.6 99.5 E-MEXP-1797-raw-cel-1669768057
15.4 99.5 E-MEXP-807-raw-cel-1173273252
15.2 99.4 E-MEXP-1797-raw-cel-1669768075
14.8 99.4 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.1 99.4 E-MEXP-1797-raw-cel-1669768039
14.1 99.4 E-MEXP-1797-raw-cel-1669768048
14.1 99.4 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.7 99.4 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.2 99.4 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.9 99.3 E-MEXP-807-raw-cel-1173273144
12.7 99.3 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
12.7 99.3 E-MEXP-1797-raw-cel-1669768066
12.2 99.3 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.1 99.3 E-MEXP-807-raw-cel-1173273088
12.1 99.3 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.1 99.2 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
11.1 99.2 E-MEXP-807-raw-cel-1173273116
10.7 99.2 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
10.6 99.2 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.9 99.1 E-MEXP-1797-raw-cel-1669768084
8.9 99.0 GSM131106 Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
8.7 99.0 E-ATMX-31-raw-cel-1516947916

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
102.9	99.9	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
94.6	99.9	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
93.6	99.9	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
90.5	99.9	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
90.4	99.9	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
78.4	99.9	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
58.5	99.8	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
57.6	99.8	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
56.0	99.8	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
55.9	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.7	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.2	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.3	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.6	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.1	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.4	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.4	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.9	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.9	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.2	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.1	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.7	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.3	99.8	GSM131330	AtGen_6-3622_Saltstress-Roots-24.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
39.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.1	99.8	GSM131329	AtGen_6-3621_Saltstress-Roots-24.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
38.1	99.8	E-MEXP-1797-raw-cel-1669767940
37.0	99.7	E-MEXP-1797-raw-cel-1669768030
35.5	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.0	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.8	99.7	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
32.1	99.7	E-MEXP-1797-raw-cel-1669767967
29.8	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.0	99.7	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
28.5	99.7	GSM134404	St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
28.5	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
21.4	99.6	E-MEXP-1797-raw-cel-1669767985
21.3	99.6	E-MEXP-1797-raw-cel-1669767958
20.5	99.6	E-MEXP-1797-raw-cel-1669768012
20.4	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.9	99.6	E-MEXP-1797-raw-cel-1669767976
19.5	99.6	GSM134396	St.Clair_1-93_349_Tsu-1_0.02%-silwet_Rep3_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
19.3	99.6	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.9	99.5	E-MEXP-807-raw-cel-1173272948
18.9	99.5	E-MEXP-1797-raw-cel-1669768021
17.5	99.5	E-MEXP-1797-raw-cel-1669767949
17.3	99.5	E-MEXP-1797-raw-cel-1669768003
17.2	99.5	E-MEXP-1797-raw-cel-1669767994
15.6	99.5	E-MEXP-1797-raw-cel-1669768057
15.4	99.5	E-MEXP-807-raw-cel-1173273252
15.2	99.4	E-MEXP-1797-raw-cel-1669768075
14.8	99.4	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.1	99.4	E-MEXP-1797-raw-cel-1669768039
14.1	99.4	E-MEXP-1797-raw-cel-1669768048
14.1	99.4	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.7	99.4	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.2	99.4	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.9	99.3	E-MEXP-807-raw-cel-1173273144
12.7	99.3	GSM134405	St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1	GSE5755	Expression Level Polymorphism Project (ELP) - Tsu-1
12.7	99.3	E-MEXP-1797-raw-cel-1669768066
12.2	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.1	99.3	E-MEXP-807-raw-cel-1173273088
12.1	99.3	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
11.1	99.2	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
11.1	99.2	E-MEXP-807-raw-cel-1173273116
10.7	99.2	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
10.6	99.2	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.9	99.1	E-MEXP-1797-raw-cel-1669768084
8.9	99.0	GSM131106	Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1	GSE5614	Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
8.7	99.0	E-ATMX-31-raw-cel-1516947916

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At3g42130
Gene name	glycine-rich protein
Module size	5 genes
NF	0.23
%ile	24.3

Co-expression analysis

Gene ID At3g42130 Gene name glycine-rich protein Module size 5 genes NF 0.23 %ile 24.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g42130

Gene name glycine-rich protein

Module size 5 genes

NF 0.23

%ile 24.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays