Co-expression analysis

Gene ID At3g31940
Gene name transposable element gene
Module size 69 genes
NF 0.50
%ile 70.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8894.01.00At3g31940822936transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.89At2g41590818757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6277.30.91At3g313403769175transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.90At1g375373767073transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.91At3g42300823220transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.89At2g29880817538unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.H.G.S.X.
0.5873.80.88At4g07460826183transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.91At4g089703769794transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.91At1g576403767555transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.89At1g353803766941transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.89At2g144303768299transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.89At2g063103768228transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.89At3g24260822014-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABFO.I.H.G.S.X.
0.5469.50.89At4g08430826402Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;OMPBFAVO.I.H.G.S.X.
0.5469.50.91At3g313603769181transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.89At3g42680823288transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.88At1g364303766999transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.90At1g526103767445transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.89At2g22050816740-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAFO.I.H.G.S.X.
0.5368.60.89At1g419103767210transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.90At3g442703769630transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.89At1g37080840625transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.89At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.5267.40.91At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At2g12610815735transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.90At2g061503767897transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.89At1g366003767017transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.88At5g47270--O.I.H.G.S.X.
0.5166.30.88At5g358203771306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.90At2g34110817972-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.90At3g31950822938-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5065.30.88At2g112353768342transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.89At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.89At1g43970840996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.5065.30.89At2g213103768520transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.88At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.89At2g10090815466transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.88At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.90At5g28420832929unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.4963.50.89At1g417953767198transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.89At2g139303768460transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.89At5g29050833041unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4862.50.90At3g31915822932transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.89At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.89At5g357103771292transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.90At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.90At1g312103766867transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.90At2g124203768687transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.88At4g038603770318transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.88At1g360403766972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.88At2g015503768052transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At1g34610840365transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.89At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.89At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At4g213603770133transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.89At2g130203768601transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At3g30490822762transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4761.20.88At3g29750822661ATP binding / aminoacyl-tRNA ligase/ aspartic-type endopeptidase/ nucleotide bindingF:aspartic-type endopeptidase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:proteolysis, translation, tRNA aminoacylation for protein translation;C:cytoplasm;PO.I.H.G.S.X.
0.4761.20.89At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.88At4g041703770474transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4558.30.88At1g357603766961transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.88At1g433003767304transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.89At1g301503766846transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.90At3g430203769521transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.90.88At3g30610822776transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.88At2g106503767860transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.88At2g115903768652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.89At2g063303768229transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.88At2g070303768139transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.499.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
44.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.999.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.799.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.599.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.199.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.099.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.399.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
39.099.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.699.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.099.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.599.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
30.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.599.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
23.699.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.699.6GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
16.399.5GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
16.199.5GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.999.5GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
15.899.5GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
15.199.4GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
13.699.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.599.4GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
12.199.3GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.999.2GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.799.1E-MEXP-807-raw-cel-1173273060
9.099.1E-MEXP-807-raw-cel-1173273116
8.999.0E-MEXP-807-raw-cel-1173273170

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0181GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage