Co-expression analysis

Gene ID At3g30840
Gene name unknown protein
Module size 50 genes
NF 0.61
%ile 82.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8391.41.00At3g30840822861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7888.60.94At2g29610817511-pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domainO.I.H.G.S.X.
0.7788.00.93At1g364403767000transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.94At2g047603767977transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.93At1g35110840395transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7586.90.92At1g338173766904transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7486.10.94At4g044403769954transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.93At3g30845822868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7184.20.96At1g360353766971transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.94At2g056603768558transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.92At2g144203768298transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.93At2g07770815424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.94At2g07692815368unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6781.60.92At2g07672815344unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6781.60.92At3g308003769137transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.92At3g55930824759RNA splicing factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.H.G.S.X.
0.6680.10.94At5g17740831642AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.6680.10.92At1g35820840484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6579.60.93At1g37020840613Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFAO.I.H.G.S.X.
0.6478.90.92At2g07673815345unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6378.10.93At4g23780828478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBVO.I.H.G.S.X.
0.6277.30.94At2g143203768070transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.93At1g43660840950transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.92At5g303803770931transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.93At3g30660822783transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.93At2g073953768424transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.92At3g42130823185glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVO.I.H.G.S.X.
0.6176.70.91At1g357903766962transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.93At3g29660822644transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At2g077303768192transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At2g076203767903transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At3g296503769022transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.94At2g116903767823transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.91At1g43320840933unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5974.70.93At1g424103767250transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.94At1g29620839839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.60.92At1g778203767718transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.93At3g29640822637transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5570.60.92At1g437403767314transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5469.50.91At2g150603767889transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.91At5g26020832671transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.92At2g29770817527kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAO.I.H.G.S.X.
0.5166.30.94At2g115903768652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.93At2g106503767860transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4963.50.93At3g430603769525transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.93At2g157003767804transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.91At2g127103768564transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4457.20.92At2g063303768229transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.94At2g061503767897transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.94At2g106103767758transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
62.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.899.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.599.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.299.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.699.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.599.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.099.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.899.8GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
45.799.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.999.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.799.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.199.7GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
36.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.399.7GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
30.599.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
28.699.7GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
28.599.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
28.499.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.399.6GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
20.799.6GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
20.099.6GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
16.999.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.399.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.099.5GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.399.4GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.899.3GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.199.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.899.3GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
11.099.2GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.999.2GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
10.799.2GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.999.1GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.999.1GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
9.799.1GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.699.1GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
9.599.1GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.499.1GSM232886Wt.4-3.90GSE9201Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5Link to GEO
9.199.1GSM131657ATGE_27_CGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
8.899.0GSM131655ATGE_27_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
8.799.0GSM131656ATGE_27_BGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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