CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g30750

Gene name transposable element gene

Module size 54 genes

NF 0.64

%ile 84.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At3g30750 822824 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.84 91.9 0.94 At4g08970 3769794 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.77 88.0 0.94 At1g36600 3767017 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.76 87.4 0.91 At3g25450 3768929 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.72 84.8 0.93 At2g19840 3768331 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.72 84.8 0.93 At3g42300 823220 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.72 84.8 0.93 At2g22050 816740 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAF O.I. H.G. S.X.
0.71 84.2 0.93 At3g42680 823288 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.71 84.2 0.93 At2g12990 3768598 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.70 83.5 0.93 At1g43970 840996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. H.G. S.X.
0.70 83.5 0.93 At2g07330 3767907 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.70 83.5 0.93 At1g52610 3767445 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.69 82.9 0.91 At1g35380 3766941 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.68 82.2 0.92 At3g13270 820526 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.67 81.6 0.92 At2g14590 815946 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.92 At1g36040 3766972 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.93 At3g44270 3769630 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.92 At3g28870 822521 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. H.G. S.X.
0.66 80.1 0.92 At3g45520 3769652 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.92 At2g14570 815944 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.66 80.1 0.93 At2g13930 3768460 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.65 79.6 0.92 At4g04560 3769781 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.65 79.6 0.93 At4g07750 3769978 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 0.92 At2g10050 815462 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 0.93 At1g37537 3767073 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.92 At1g32590 3766881 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.92 At1g47816 3767392 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.91 At2g10090 815466 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.92 At2g21460 3768354 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.62 77.3 0.92 At2g06310 3768228 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.62 77.3 0.93 At1g37080 840625 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.62 77.3 0.92 At5g47270 - - O.I. H.G. S.X.
0.62 77.3 0.92 At3g42120 823184 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.61 76.7 0.92 At2g07510 3768270 transposable element gene pseudogene of Ulp1 protease family protein O.I. H.G. S.X.
0.61 76.7 0.92 At2g10900 3768617 transposable element gene similarity to non-LTR retroelement protein O.I. H.G. S.X.
0.61 76.7 0.92 At3g27800 822400 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.61 76.7 0.92 At5g35820 3771306 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.60 75.7 0.92 At4g04170 3770474 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.60 75.7 0.92 At3g31950 822938 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.60 75.7 0.92 At2g13270 815813 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.92 At2g14950 3768119 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.92 At4g03750 825677 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.92 At1g41910 3767210 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 0.92 At4g04590 3770515 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 0.92 At2g05960 3768174 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 0.91 At4g03720 3769891 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 0.92 At5g34800 3771185 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.57 73.8 0.92 At2g07650 3767967 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.56 73.0 0.92 At3g24260 822014 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABF O.I. H.G. S.X.
0.55 70.6 0.92 At1g41795 3767198 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.92 At1g31210 3766867 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.93 At3g31340 3769175 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.92 At2g29605 817510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB O.I. H.G. S.X.
0.49 63.5 0.92 At2g41590 818757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At3g30750	822824	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.84	91.9	0.94	At4g08970	3769794	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.77	88.0	0.94	At1g36600	3767017	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.76	87.4	0.91	At3g25450	3768929	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.72	84.8	0.93	At2g19840	3768331	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.72	84.8	0.93	At3g42300	823220	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.72	84.8	0.93	At2g22050	816740	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAF	O.I.	H.G.	S.X.
0.71	84.2	0.93	At3g42680	823288	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.71	84.2	0.93	At2g12990	3768598	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.70	83.5	0.93	At1g43970	840996	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	H.G.	S.X.
0.70	83.5	0.93	At2g07330	3767907	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.70	83.5	0.93	At1g52610	3767445	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.69	82.9	0.91	At1g35380	3766941	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.68	82.2	0.92	At3g13270	820526	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.67	81.6	0.92	At2g14590	815946	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.92	At1g36040	3766972	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.93	At3g44270	3769630	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.92	At3g28870	822521	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	H.G.	S.X.
0.66	80.1	0.92	At3g45520	3769652	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.92	At2g14570	815944	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.66	80.1	0.93	At2g13930	3768460	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.65	79.6	0.92	At4g04560	3769781	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.65	79.6	0.93	At4g07750	3769978	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.64	78.9	0.92	At2g10050	815462	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.64	78.9	0.93	At1g37537	3767073	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.92	At1g32590	3766881	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.92	At1g47816	3767392	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.91	At2g10090	815466	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.92	At2g21460	3768354	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.62	77.3	0.92	At2g06310	3768228	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.62	77.3	0.93	At1g37080	840625	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.62	77.3	0.92	At5g47270		-	-	O.I.	H.G.	S.X.
0.62	77.3	0.92	At3g42120	823184	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.61	76.7	0.92	At2g07510	3768270	transposable element gene	pseudogene of Ulp1 protease family protein	O.I.	H.G.	S.X.
0.61	76.7	0.92	At2g10900	3768617	transposable element gene	similarity to non-LTR retroelement protein	O.I.	H.G.	S.X.
0.61	76.7	0.92	At3g27800	822400	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.61	76.7	0.92	At5g35820	3771306	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.60	75.7	0.92	At4g04170	3770474	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.60	75.7	0.92	At3g31950	822938	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.60	75.7	0.92	At2g13270	815813	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.92	At2g14950	3768119	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.92	At4g03750	825677	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.92	At1g41910	3767210	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	0.92	At4g04590	3770515	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	0.92	At2g05960	3768174	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	0.91	At4g03720	3769891	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	0.92	At5g34800	3771185	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.57	73.8	0.92	At2g07650	3767967	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.56	73.0	0.92	At3g24260	822014	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABF	O.I.	H.G.	S.X.
0.55	70.6	0.92	At1g41795	3767198	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.92	At1g31210	3766867	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.93	At3g31340	3769175	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.92	At2g29605	817510	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB	O.I.	H.G.	S.X.
0.49	63.5	0.92	At2g41590	818757	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
80.5 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.3 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.5 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.0 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.2 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.9 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.9 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.0 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.9 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.5 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.2 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.0 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.7 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.0 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.6 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.3 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.2 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.8 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.0 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.0 99.6 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.9 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.8 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.8 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.7 99.6 GSM128753 De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1 GSE5529 Arabidopsis E2F target genes
20.3 99.6 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
20.2 99.6 GSM128756 De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1 GSE5529 Arabidopsis E2F target genes
19.0 99.5 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
18.9 99.5 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
16.9 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3 99.4 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
12.9 99.3 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.2 99.2 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.1 99.1 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
80.5	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
40.3	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.9	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.5	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.0	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.2	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5	99.7	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.9	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.9	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.0	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.9	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.5	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.2	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.0	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.7	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.0	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.6	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
26.3	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.2	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.8	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
25.0	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.0	99.6	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.9	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.8	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.8	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.7	99.6	GSM128753	De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1	GSE5529	Arabidopsis E2F target genes
20.3	99.6	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
20.2	99.6	GSM128756	De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1	GSE5529	Arabidopsis E2F target genes
19.0	99.5	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
18.9	99.5	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
16.9	99.5	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.3	99.4	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
12.9	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.2	99.2	GSM184520	Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.1	99.1	GSM67087	Arabidopsis_Stigma03	GSE3056	Arabidopsis Pollination Study

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At3g30750
Gene name	transposable element gene
Module size	54 genes
NF	0.64
%ile	84.5

Co-expression analysis

Gene ID At3g30750 Gene name transposable element gene Module size 54 genes NF 0.64 %ile 84.5

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g30750

Gene name transposable element gene

Module size 54 genes

NF 0.64

%ile 84.5

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays