Co-expression analysis

Gene ID At3g30750
Gene name transposable element gene
Module size 54 genes
NF 0.64
%ile 84.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g30750822824transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.8491.90.94At4g089703769794transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7788.00.94At1g366003767017transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7687.40.91At3g254503768929transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.93At2g198403768331transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.93At3g42300823220transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.93At2g22050816740-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAFO.I.H.G.S.X.
0.7184.20.93At3g42680823288transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7184.20.93At2g129903768598transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.93At1g43970840996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.H.G.S.X.
0.7083.50.93At2g073303767907transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7083.50.93At1g526103767445transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6982.90.91At1g353803766941transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6882.20.92At3g13270820526transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.92At2g14590815946transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.92At1g360403766972transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.93At3g442703769630transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.92At3g28870822521-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.6680.10.92At3g455203769652transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.92At2g14570815944transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6680.10.93At2g139303768460transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.92At4g045603769781transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6579.60.93At4g077503769978transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.92At2g10050815462transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.93At1g375373767073transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.92At1g325903766881transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.92At1g478163767392transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.91At2g10090815466transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6378.10.92At2g214603768354transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.92At2g063103768228transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.93At1g37080840625transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6277.30.92At5g47270--O.I.H.G.S.X.
0.6277.30.92At3g42120823184transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.92At2g075103768270transposable element genepseudogene of Ulp1 protease family proteinO.I.H.G.S.X.
0.6176.70.92At2g109003768617transposable element genesimilarity to non-LTR retroelement proteinO.I.H.G.S.X.
0.6176.70.92At3g27800822400-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6176.70.92At5g358203771306transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At4g041703770474transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.92At3g31950822938-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.6075.70.92At2g13270815813transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.92At2g149503768119transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.92At4g03750825677transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5974.70.92At1g419103767210transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.92At4g045903770515transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.92At2g059603768174transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.91At4g037203769891transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5873.80.92At5g348003771185transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5773.80.92At2g076503767967transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.92At3g24260822014-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMABFO.I.H.G.S.X.
0.5570.60.92At1g417953767198transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.92At1g312103766867transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5368.60.93At3g313403769175transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5267.40.92At2g29605817510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.4963.50.92At2g41590818757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
80.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
40.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.099.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.299.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.999.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.099.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.999.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.599.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.299.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.799.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.699.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.399.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.099.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
23.999.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.899.6GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.899.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.799.6GSM128753De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
20.399.6GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
20.299.6GSM128756De Veylder_1-8_E2Fa-Dpa_Rep4_ATH1GSE5529Arabidopsis E2F target genesLink to GEO
19.099.5GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
18.999.5GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.999.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.399.4GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.999.3GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.299.2GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.199.1GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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