Co-expression analysis

Gene ID At3g29600
Gene name transposable element gene
Module size 17 genes
NF 0.61
%ile 82.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5368.61.00At3g29600822625transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7284.80.83At5g35290833483unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.7184.20.84At3g14670820695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.H.G.S.X.
0.6982.90.82At1g44990841064unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane systemO.I.H.G.S.X.
0.6882.20.86At3g50320824194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.82At3g45120823648transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6781.60.82At2g04870815034unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.H.G.S.X.
0.6478.90.83At1g172753766742transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6478.90.86At3g43150823381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6378.10.86At5g27340832792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.6378.10.83At5g271903770742transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.87At4g088903769919transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6075.70.82At5g37880833767transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.81At2g144103768296-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.83At2g107803767798transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.87At1g35614840459unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4253.90.81At1g02420837779pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMFBAO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.O.I.H.G.S.X.Other DB
0.7486.10.87At5g36840833651transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.7385.50.74At1g77240844060AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.H.G.S.X.
0.7184.20.81At1g06580837169pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.6781.60.81At2g20970816631unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPVO.I.H.G.S.X.
0.6579.60.82At5g25750832641unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.6579.60.81At2g19300816447unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6579.60.78At5g47160834762YDG/SRA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBFO.I.H.G.S.X.
0.6378.10.79At5g39140833907unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.6378.10.82At3g31310822878transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.6176.70.79At2g04370814976unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5974.70.80At1g49680841392unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOVFPO.I.H.G.S.X.
0.5873.80.77At5g10680830932calmodulin-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFVPAO.I.H.G.S.X.
0.5673.00.81At4g086603770101transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.78At5g27160832774transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5673.00.77At1g32010840092myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBPFAO.I.H.G.S.X.
0.5368.60.75At3g44950823630glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVAO.I.H.G.S.X.
0.5368.60.77At5g26840832742unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.H.G.S.X.
0.5166.30.85At3g62490825423transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5166.30.81At5g36650833629transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.80At3g46380823785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.30.84At1g520103767438transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.84At1g43870840983transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4862.50.75At1g35500840443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4862.50.85At2g06700815230transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4659.80.85At3g15130820744pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.H.G.S.X.
0.4659.80.78At1g41820840790unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFO.I.H.G.S.X.
0.4659.80.75At1g62860842587-pseudogene of pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4457.20.79At2g12880815767zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPVO.I.H.G.S.X.
0.4152.40.75At2g26120817152glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.H.G.S.X.
0.4050.80.84At4g08750826444transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.74At2g10020815459unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4050.80.66At3g29610822626transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.40.79At4g038403770316transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.87At1g33860840283unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknownO.I.H.G.S.X.
0.3846.70.77At2g14020815886transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3846.70.77At3g52830824449-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.H.G.S.X.
0.3643.60.75At4g22480--O.I.H.G.S.X.
0.3643.60.84At5g35010833446transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.76At3g32080822963transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.77At2g24010816935scpl23 (serine carboxypeptidase-like 23)F:serine-type carboxypeptidase activity;P:proteolysis;C:unknown;PMFOBO.I.H.G.S.X.
0.3338.10.85At1g41770840783transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.70At1g71760843506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3338.10.76At4g20520827800RNA binding / RNA-directed DNA polymeraseF:RNA binding, RNA-directed DNA polymerase activity;P:RNA-dependent DNA replication;C:cellular_component unknown;PMBOFO.I.H.G.S.X.
0.3235.70.73At3g44980823633unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3235.70.71At2g23480816880transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.84At2g010293767997transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.72At5g32590833234myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVO.I.H.G.S.X.
0.3133.80.75At1g74900843829OTP43 (organelle transcript processing defect 43)F:unknown;P:RNA splicing;C:cellular_component unknown;POMFBAO.I.H.G.S.X.
0.3133.80.77At1g35570840453transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.76At2g22030816738kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMVBOAO.I.H.G.S.X.

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.999.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
43.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.299.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.499.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.799.7E-ATMX-1-raw-cel-1112746095
36.599.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.499.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.199.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.999.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.199.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.799.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.699.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.599.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.699.7GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
28.299.7E-MEXP-1443-raw-cel-1581869573
26.899.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.699.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
19.199.6GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
17.199.5GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
15.499.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.899.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.799.4GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.999.3GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.999.3E-MEXP-1443-raw-cel-1581869515
11.399.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.699.2GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
10.599.2GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.699.1GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
8.799.0GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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