Co-expression analysis

Gene ID At3g29410
Gene name terpene synthase/cyclase family protein
Module size 5 genes
NF 0.47
%ile 67.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4355.31.00At3g29410822602terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.H.G.S.X.
0.6781.60.59At3g03670821193peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.H.G.S.X.
0.6781.60.64At3g05950819765germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOO.I.H.G.S.X.
0.6176.70.73At3g60270825198uclacyanin, putativeF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBVFMAO.I.H.G.S.X.
0.2319.30.62At1g26250839166proline-rich extensin, putativeF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.699.8GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
41.799.8GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
41.499.8GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
40.599.8GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
36.999.7E-MEXP-1138-raw-cel-1432772522
36.399.7GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
35.399.7E-ATMX-33-raw-cel-1562596310
34.099.7E-MEXP-1138-raw-cel-1432772586
34.099.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
33.999.7E-MEXP-1138-raw-cel-1432772970
33.199.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
32.899.7E-MEXP-1138-raw-cel-1432772554
32.599.7E-MEXP-1138-raw-cel-1432772746
31.199.7E-MEXP-1138-raw-cel-1432772682
30.399.7E-MEXP-1138-raw-cel-1432772618
29.799.7E-MEXP-1138-raw-cel-1432773130
29.799.7GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
28.699.7E-MEXP-1138-raw-cel-1432772714
28.699.7GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
28.499.7E-ATMX-33-raw-cel-1562596264
28.199.7E-ATMX-35-raw-cel-1574334848
28.199.7GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
27.299.7E-MEXP-1138-raw-cel-1432772842
27.199.7E-MEXP-1138-raw-cel-1432772650
26.899.7E-MEXP-1138-raw-cel-1432773386
26.899.7E-MEXP-1138-raw-cel-1432772874
26.799.7E-MEXP-1138-raw-cel-1432772938
26.699.7E-MEXP-1138-raw-cel-1432773002
26.699.7E-MEXP-285-raw-cel-440782791
26.299.7GSM151698gh3.5-1D uninoculated, biological replicate 2GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
26.099.7GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
26.099.7E-MEXP-1138-raw-cel-1432773162
25.599.7E-MEXP-1138-raw-cel-1432773194
25.199.6E-MEXP-1138-raw-cel-1432773098
24.799.6E-MEXP-1138-raw-cel-1432773226
24.799.6E-MEXP-285-raw-cel-440782725
24.699.6GSM38668NSNPGSE2268Arabidopsis polysome microarrayLink to GEO
24.599.6GSM318345ML_35DAS_2GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
24.399.6E-ATMX-35-raw-cel-1574334864
24.399.6GSM318332ML_35DAS_1GSE12676Arabidopsis thaliana Ler developmental seriesLink to GEO
23.199.6E-MEXP-1138-raw-cel-1432772810
23.099.6E-MEXP-1138-raw-cel-1432772778
22.899.6E-MEXP-1138-raw-cel-1432773354
21.299.6E-MEXP-1797-raw-cel-1669768048
20.199.6GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
20.099.6E-MEXP-1138-raw-cel-1432773322
19.299.6GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
19.199.6E-MEXP-1138-raw-cel-1432772906
18.399.5E-MEXP-1138-raw-cel-1432773066
17.999.5GSM151697gh3.5-1D uninoculated, biological replicate 1GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
17.399.5GSM151694Col-0 uninoculated, biological replicate 1GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
17.299.5E-ATMX-35-raw-cel-1574334880
16.299.5GSM151695Col-0 uninoculated, biological replicate 2GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
16.199.5E-MEXP-1112-raw-cel-1590665325
15.799.5E-MEXP-1797-raw-cel-1669768084
15.099.4GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
14.999.4E-MEXP-1797-raw-cel-1669767958
14.999.4E-MEXP-1138-raw-cel-1432773290
14.399.4E-MEXP-1138-raw-cel-1432773258
14.099.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.899.4E-MEXP-1797-raw-cel-1669768057
13.099.4GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.Link to GEO
12.599.3E-MEXP-1797-raw-cel-1669767976
12.499.3GSM173447oxt6 mutant, biological rep3GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thalianaLink to GEO
12.199.3GSM75510Col-0 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
11.999.3E-MEXP-1797-raw-cel-1669767967
11.899.3E-MEXP-1454-raw-cel-1585858145
11.799.3GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
11.499.3E-MEXP-1138-raw-cel-1432773034
11.299.2GSM151699gh3.5-1D uninoculated, biological replicate 3GSE6556Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)Link to GEO
11.199.2E-MEXP-1797-raw-cel-1669768003
11.099.2GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
10.599.2GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
10.499.2E-MEXP-1797-raw-cel-1669767949
10.299.2E-MEXP-1112-raw-cel-1590665429
9.699.1GSM75514Col-0 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiationLink to GEO
9.699.1GSM131609ATGE_43_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.599.1E-ATMX-20-raw-cel-1380188896
9.499.1GSM38670DSNPGSE2268Arabidopsis polysome microarrayLink to GEO
9.499.1GSM131610ATGE_43_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
9.499.1GSM173446oxt6 mutant, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thalianaLink to GEO
9.299.1GSM297896LWD1 and LWD2 in Arabidopsis photoperiod regulation (wt rep 2)GSE11762LWD1 and LWD2 in Arabidopsis photoperiod regulationLink to GEO
9.099.1E-MEXP-1454-raw-cel-1585858181
9.099.1GSM7717604h normal CO2 + light replicate AGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expressionLink to GEO
8.699.0GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.Link to GEO
8.699.0GSM268008Col-0, Time 0, rep-AGSE10646BTH treated mkk1, mkk2 and mkk1/2 knockout mutantLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0631GO:0009664A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.024100360Phenylalanine metabolismLink to KEGG PATHWAY
0.023100680Methane metabolismLink to KEGG PATHWAY
0.019100940Phenylpropanoid biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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