Co-expression analysis

Gene ID At3g28690
Gene name protein kinase, putative
Module size 5 genes
NF 0.34
%ile 46.1



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5368.61.00At3g28690822499protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.5065.30.91At1g18470838427zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVFO.I.H.G.S.X.
0.3338.10.91At5g42870834298lipin family proteinF:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOPO.I.H.G.S.X.
0.2930.30.91At1g68820843214membrane protein, putativeF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVFO.I.H.G.S.X.
0.1811.40.91At3g10250820187unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
230.3100.0GSM184484Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
125.099.9GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
113.399.9GSM184477Lateral Root Cap root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
89.299.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
83.999.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
82.199.9GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
79.399.9GSM184483Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
74.899.9GSM133969Birnbaum_1-20_LRC-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
70.799.9GSM131279AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
70.399.9GSM184481Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
65.799.8GSM133968Birnbaum_1-19_LRC-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
56.899.8GSM184482Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
54.999.8GSM131280AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
48.999.8GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
48.899.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.799.8GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
43.999.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.099.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.099.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.099.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.199.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.699.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.499.7GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
35.799.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.799.7GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
34.499.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.499.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.399.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.599.7GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
32.199.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.199.7GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
28.199.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.799.7GSM184479Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.199.6GSM74901Wildtype_24H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
21.599.6GSM184476Lateral Root Cap root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.299.5GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
16.599.5GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
16.499.5GSM74900Wildtype_24H Cold_Rep1GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
15.699.5GSM131181AtGen_D-13_1-BS_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
15.299.4GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.599.4GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
13.899.4GSM142867GW001_ATH1_A12-Warre-6caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
13.799.4GSM131214AtGen_D-48_3-WS_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
12.799.3GSM142864GW001_ATH1_A9-Warre-WcaGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
12.599.3GSM142865GW001_ATH1_A10-Warre-WcaGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
12.499.3GSM131196AtGen_D-30_2-AS_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
12.399.3GSM131178AtGen_D-10_1-FS_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
12.199.3GSM184844Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
12.199.3GSM184526Stele root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.099.3GSM142869GW001_ATH1_A14-Warre-3caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
11.999.3GSM131198AtGen_D-32_2-WS_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
11.899.3GSM131182AtGen_D-14_1-AS_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
11.599.3GSM74909ice1_24H Cold_Rep2GSE3326ICE1 regulation of the Arabidopsis Cold-Responsive TranscriptomeLink to GEO
11.299.2GSM131184AtGen_D-16_1-WS_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
11.099.2GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.099.2GSM131195AtGen_D-29_2-BS_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
10.999.2GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.899.2GSM131216AtGen_D-26_1-FS_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
10.699.2GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
10.599.2E-ATMX-1-raw-cel-1112746267
10.399.2GSM184915Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.399.2GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
10.299.2GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
10.099.2GSM133407Bramke_A1-warre-WTCGSE5711Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.Link to GEO
9.999.1GSM131180AtGen_D-12_1-RS_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.899.1GSM131194AtGen_D-28_2-RS_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.899.1GSM131211AtGen_D-45_3-BS_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.699.1GSM131183AtGen_D-15_1-US_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.699.1GSM131208AtGen_D-42_3-FS_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.699.1GSM184843Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with saltLink to GEO
9.599.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.599.1GSM142592DB001_ATH1_A2-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
9.599.1E-ATMX-1-raw-cel-1112746209
9.199.1GSM131213AtGen_D-47_3-US_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.099.1GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.099.1GSM142866GW001_ATH1_A11-Warre-6caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
9.099.1GSM131210AtGen_D-44_3-RS_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.099.1E-MEXP-1344-raw-cel-1559561713
8.899.0GSM142871GW001_ATH1_A16-Warre-2caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responsesLink to GEO
8.799.0E-MEXP-1345-raw-cel-1559561289
8.799.0GSM128808Zarka_3-4_MT-E2A_Rep1_ATH1GSE5536Response to CBF2 expressionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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