CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g28690

Gene name protein kinase, putative

Module size 5 genes

NF 0.34

%ile 46.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.53 68.6 1.00 At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.50 65.3 0.91 At1g18470 838427 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF O.I. H.G. S.X.
0.33 38.1 0.91 At5g42870 834298 lipin family protein F:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOP O.I. H.G. S.X.
0.29 30.3 0.91 At1g68820 843214 membrane protein, putative F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF O.I. H.G. S.X.
0.18 11.4 0.91 At3g10250 820187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.53	68.6	1.00	At3g28690	822499	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.50	65.3	0.91	At1g18470	838427	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOVF	O.I.	H.G.	S.X.
0.33	38.1	0.91	At5g42870	834298	lipin family protein	F:unknown;P:biological_process unknown;C:apoplast, membrane;MFBOP	O.I.	H.G.	S.X.
0.29	30.3	0.91	At1g68820	843214	membrane protein, putative	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF	O.I.	H.G.	S.X.
0.18	11.4	0.91	At3g10250	820187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
230.3 100.0 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
125.0 99.9 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
113.3 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
89.2 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
83.9 99.9 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
82.1 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.3 99.9 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
74.8 99.9 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
70.7 99.9 GSM131279 AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
70.3 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
65.7 99.8 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
56.8 99.8 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
54.9 99.8 GSM131280 AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
48.9 99.8 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
48.8 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.7 99.8 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
43.9 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.0 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.1 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.7 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.5 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.4 99.7 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
35.7 99.7 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.7 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
34.4 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
34.4 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.3 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.3 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.2 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.5 99.7 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
32.1 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.1 99.7 GSM184913 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
28.1 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.7 99.7 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.1 99.6 GSM74901 Wildtype_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
21.5 99.6 GSM184476 Lateral Root Cap root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.2 99.5 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
16.5 99.5 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
16.4 99.5 GSM74900 Wildtype_24H Cold_Rep1 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
15.6 99.5 GSM131181 AtGen_D-13_1-BS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
15.2 99.4 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.5 99.4 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.8 99.4 GSM142867 GW001_ATH1_A12-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
13.7 99.4 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
12.7 99.3 GSM142864 GW001_ATH1_A9-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.5 99.3 GSM142865 GW001_ATH1_A10-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.4 99.3 GSM131196 AtGen_D-30_2-AS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
12.3 99.3 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
12.1 99.3 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
12.1 99.3 GSM184526 Stele root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.0 99.3 GSM142869 GW001_ATH1_A14-Warre-3ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
11.9 99.3 GSM131198 AtGen_D-32_2-WS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
11.8 99.3 GSM131182 AtGen_D-14_1-AS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
11.5 99.3 GSM74909 ice1_24H Cold_Rep2 GSE3326 ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
11.2 99.2 GSM131184 AtGen_D-16_1-WS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
11.0 99.2 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 GSM131195 AtGen_D-29_2-BS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
10.9 99.2 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.8 99.2 GSM131216 AtGen_D-26_1-FS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
10.6 99.2 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
10.5 99.2 E-ATMX-1-raw-cel-1112746267
10.3 99.2 GSM184915 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
10.3 99.2 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.2 99.2 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
10.0 99.2 GSM133407 Bramke_A1-warre-WTC GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
9.9 99.1 GSM131180 AtGen_D-12_1-RS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
9.8 99.1 GSM131194 AtGen_D-28_2-RS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
9.8 99.1 GSM131211 AtGen_D-45_3-BS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
9.6 99.1 GSM131183 AtGen_D-15_1-US_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
9.6 99.1 GSM131208 AtGen_D-42_3-FS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
9.6 99.1 GSM184843 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.5 99.1 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.5 99.1 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
9.5 99.1 E-ATMX-1-raw-cel-1112746209
9.1 99.1 GSM131213 AtGen_D-47_3-US_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
9.0 99.1 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.0 99.1 GSM142866 GW001_ATH1_A11-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
9.0 99.1 GSM131210 AtGen_D-44_3-RS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
9.0 99.1 E-MEXP-1344-raw-cel-1559561713
8.8 99.0 GSM142871 GW001_ATH1_A16-Warre-2ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
8.7 99.0 E-MEXP-1345-raw-cel-1559561289
8.7 99.0 GSM128808 Zarka_3-4_MT-E2A_Rep1_ATH1 GSE5536 Response to CBF2 expression

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
230.3	100.0	GSM184484	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
125.0	99.9	GSM184478	Lateral Root Cap root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
113.3	99.9	GSM184477	Lateral Root Cap root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
89.2	99.9	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
83.9	99.9	GSM133759	Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
82.1	99.9	GSM184480	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
79.3	99.9	GSM184483	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
74.8	99.9	GSM133969	Birnbaum_1-20_LRC-2_Rep2_ATH1	GSE5749	A gene expression map of the Arabidopsis root
70.7	99.9	GSM131279	AtGen_6-1611_Cold(4°C)-Shoots-24.0h_Rep1	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
70.3	99.9	GSM184481	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
65.7	99.8	GSM133968	Birnbaum_1-19_LRC-1_Rep1_ATH1	GSE5749	A gene expression map of the Arabidopsis root
56.8	99.8	GSM184482	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
54.9	99.8	GSM131280	AtGen_6-1612_Cold(4°C)-Shoots-24.0h_Rep2	GSE5621	AtGenExpress: Stress Treatments (Cold stress)
48.9	99.8	GSM131699	ATGE_81_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
48.8	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
44.7	99.8	GSM131698	ATGE_81_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
43.9	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.0	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.0	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.1	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.1	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.0	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.9	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.7	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.5	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.4	99.7	GSM131697	ATGE_81_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
35.7	99.7	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.7	99.7	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
34.4	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
34.4	99.7	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.3	99.7	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.3	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.2	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
32.5	99.7	GSM184914	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
32.1	99.7	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.1	99.7	GSM184913	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
28.1	99.7	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.7	99.7	GSM184479	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
22.1	99.6	GSM74901	Wildtype_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
21.5	99.6	GSM184476	Lateral Root Cap root cells 2hr KCl control treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
18.2	99.5	GSM184893	Arabidopsis, root cells, columella root cap, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
16.5	99.5	GSM10451	WT Mature Green Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
16.4	99.5	GSM74900	Wildtype_24H Cold_Rep1	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
15.6	99.5	GSM131181	AtGen_D-13_1-BS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
15.2	99.4	GSM133776	Lindsey_1-1_globular-apical_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.5	99.4	GSM176879	AWP_Control_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.8	99.4	GSM142867	GW001_ATH1_A12-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
13.7	99.4	GSM131214	AtGen_D-48_3-WS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
12.7	99.3	GSM142864	GW001_ATH1_A9-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.5	99.3	GSM142865	GW001_ATH1_A10-Warre-Wca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
12.4	99.3	GSM131196	AtGen_D-30_2-AS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
12.3	99.3	GSM131178	AtGen_D-10_1-FS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
12.1	99.3	GSM184844	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
12.1	99.3	GSM184526	Stele root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.0	99.3	GSM142869	GW001_ATH1_A14-Warre-3ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
11.9	99.3	GSM131198	AtGen_D-32_2-WS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
11.8	99.3	GSM131182	AtGen_D-14_1-AS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
11.5	99.3	GSM74909	ice1_24H Cold_Rep2	GSE3326	ICE1 regulation of the Arabidopsis Cold-Responsive Transcriptome
11.2	99.2	GSM131184	AtGen_D-16_1-WS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
11.0	99.2	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM131195	AtGen_D-29_2-BS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
10.9	99.2	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.8	99.2	GSM131216	AtGen_D-26_1-FS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
10.6	99.2	GSM10456	WT Post-Mature Green Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
10.5	99.2	E-ATMX-1-raw-cel-1112746267
10.3	99.2	GSM184915	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
10.3	99.2	GSM266668	Arabidopsis, root cells, columella root cap, -Fe, replicate 3	GSE10501	Expression analysis of root cell-types after iron deficiency (-Fe) treatment
10.2	99.2	GSM142596	DB001_ATH1_A6-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
10.0	99.2	GSM133407	Bramke_A1-warre-WTC	GSE5711	Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
9.9	99.1	GSM131180	AtGen_D-12_1-RS_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.8	99.1	GSM131194	AtGen_D-28_2-RS_REP2_ATH1	GSE5617	AtGenExpress: Light treatments
9.8	99.1	GSM131211	AtGen_D-45_3-BS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	GSM131183	AtGen_D-15_1-US_REP1_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	GSM131208	AtGen_D-42_3-FS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.6	99.1	GSM184843	Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
9.5	99.1	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
9.5	99.1	GSM142592	DB001_ATH1_A2-Brown-cal	GSE6148	The trans-differentiation of cultured Arabidopsis cells
9.5	99.1	E-ATMX-1-raw-cel-1112746209
9.1	99.1	GSM131213	AtGen_D-47_3-US_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.0	99.1	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.0	99.1	GSM142866	GW001_ATH1_A11-Warre-6ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
9.0	99.1	GSM131210	AtGen_D-44_3-RS_REP3_ATH1	GSE5617	AtGenExpress: Light treatments
9.0	99.1	E-MEXP-1344-raw-cel-1559561713
8.8	99.0	GSM142871	GW001_ATH1_A16-Warre-2ca	GSE6177	The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
8.7	99.0	E-MEXP-1345-raw-cel-1559561289
8.7	99.0	GSM128808	Zarka_3-4_MT-E2A_Rep1_ATH1	GSE5536	Response to CBF2 expression

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At3g28690
Gene name	protein kinase, putative
Module size	5 genes
NF	0.34
%ile	46.1

Co-expression analysis

Gene ID At3g28690 Gene name protein kinase, putative Module size 5 genes NF 0.34 %ile 46.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g28690

Gene name protein kinase, putative

Module size 5 genes

NF 0.34

%ile 46.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays