Co-expression analysis

Gene ID At3g26290
Gene name CYP71B26
Module size 85 genes
NF 0.20
%ile 18.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g26290822232CYP71B26putative cytochrome P450O.I.H.G.S.X.
0.4558.30.76At3g44880823622ACD1 (ACCELERATED CELL DEATH 1)Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.O.I.H.G.S.X.
0.4457.20.71At1g22370838844AtUGT85A5 (UDP-glucosyl transferase 85A5)F:transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:unknown;PMVBOFO.I.H.G.S.X.
0.4050.80.75At4g17840827507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVO.I.H.G.S.X.
0.3643.60.71At2g29670817517bindingF:binding;P:unknown;C:chloroplast;PBOAMO.I.H.G.S.X.
0.3338.10.72At1g13090837866CYP71B28putative cytochrome P450O.I.H.G.S.X.
0.3338.10.72At5g43850834407ARD4F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOO.I.H.G.S.X.
0.3338.10.74At1g07250837236UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.H.G.S.X.
0.3338.10.70At4g13800827014permease-relatedF:unknown;P:biological_process unknown;C:plasma membrane;MFPOBO.I.H.G.S.X.
0.3235.70.71At5g434408343642-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseO.I.H.G.S.X.
0.3235.70.74At3g18500821380-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.3235.70.72At1g21590838760protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.3133.80.72At1g73750843710-F:unknown;P:unknown;C:unknown;PBMOO.I.H.G.S.X.
0.3133.80.74At4g11570826761haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAFO.I.H.G.S.X.
0.3032.10.74At1g30500839929NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.H.G.S.X.
0.3032.10.71At4g13550826988triacylglycerol lipaseF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFMBVO.I.H.G.S.X.
0.3032.10.76At1g64810842789APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)chloroplast APO1O.I.H.G.S.X.
0.3032.10.75At4g11960826803PGRL1B (PGR5-Like B)Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).O.I.H.G.S.X.
0.2930.30.70At4g10770826672OPT7 (OLIGOPEPTIDE TRANSPORTER 7)oligopeptide transporterO.I.H.G.S.X.
0.2930.30.75At2g21380816676kinesin motor protein-relatedF:protein binding, microtubule motor activity, zinc ion binding, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.H.G.S.X.
0.2830.30.70At2g28720817421histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFBO.I.H.G.S.X.
0.2830.30.72At3g56630824830CYP94D2member of CYP94DO.I.H.G.S.X.
0.2830.30.73At5g11840831057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.2830.30.74At3g26280822231CYP71B4cytochrome P450 monooxygenaseO.I.H.G.S.X.
0.2726.20.75At2g40840818682DPE2 (DISPROPORTIONATING ENZYME 2)Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose.O.I.H.G.S.X.
0.2726.20.71At3g47500823904CDF3 (CYCLING DOF FACTOR 3)Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.O.I.H.G.S.X.
0.2726.20.72At3g61220825294short-chain dehydrogenase/reductase (SDR) family proteinF:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPAO.I.H.G.S.X.
0.2624.40.70At1g70580843395AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1O.I.H.G.S.X.
0.2624.40.77At5g05200830402ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVO.I.H.G.S.X.
0.2624.40.71At2g35060818071KUP11potassium transporterO.I.H.G.S.X.
0.2522.60.70At1g06430837154FTSH8encodes a FtsH protease that is localized to the chloroplastO.I.H.G.S.X.
0.2522.60.73At3g26580822266-F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;MOFPBVAO.I.H.G.S.X.
0.2420.70.72At1g77930844128DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAVO.I.H.G.S.X.
0.2319.30.73At4g27990828912YGGT family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOPO.I.H.G.S.X.
0.2319.30.70At5g64170836538dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMAO.I.H.G.S.X.
0.2319.30.75At1g73470843682unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO.I.H.G.S.X.
0.2217.50.72At2g46340819242SPA1 (SUPPRESSOR OF PHYA-105 1)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.O.I.H.G.S.X.
0.2217.50.72At4g18390827568TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.H.G.S.X.
0.2217.50.74At1g73170843649ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidaseF:nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding;P:proteolysis;C:chloroplast;BOPMAFO.I.H.G.S.X.
0.2115.80.71At1g21640838766NADK2Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.O.I.H.G.S.X.
0.2115.80.71At4g18270827553ATTRANS11Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.O.I.H.G.S.X.
0.2115.80.71At2g46100819218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.H.G.S.X.
0.2115.80.73At1g78680844204ATGGH2 (gamma-glutamyl hydrolase 2)The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.O.I.H.G.S.X.
0.2115.80.76At4g09900826580MES12 (METHYL ESTERASE 12)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.H.G.S.X.
0.2115.80.72At5g67030836838ABA1 (ABA DEFICIENT 1)Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.O.I.H.G.S.X.
0.2115.80.70At3g11670820339DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).O.I.H.G.S.X.
0.2014.40.73At4g04770825814ATABC1 (ATP BINDING CASSETTE PROTEIN 1)Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.O.I.H.G.S.X.
0.2014.40.70At1g31170840004SRX (SULFIREDOXIN)encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stressO.I.H.G.S.X.
0.2014.40.75At5g57040835808lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:chloroplast;BPOMO.I.H.G.S.X.
0.1811.40.71At4g27390828847unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BPO.I.H.G.S.X.
0.1811.40.73At5g19540832074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBO.I.H.G.S.X.
0.1811.40.70At5g36160833613aminotransferase-relatedF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.H.G.S.X.
0.1710.20.70At4g17370827449oxidoreductase family proteinF:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPO.I.H.G.S.X.
0.1710.20.70At3g27820822402MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2O.I.H.G.S.X.
0.1710.20.71At3g15840820827PIFI (post-illumination chlorophyll fluorescence increase)Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.O.I.H.G.S.X.
0.168.80.71At3g13040820490myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFBAO.I.H.G.S.X.
0.168.80.72At1g03310839531isoamylase, putative / starch debranching enzyme, putativeEncodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.O.I.H.G.S.X.
0.157.80.70At1g68830843215STN7 (Stt7 homolog STN7)STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptationO.I.H.G.S.X.
0.157.80.73At1g43620840946UDP-glucose:sterol glucosyltransferase, putativeF:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, vacuole;BMFPOVO.I.H.G.S.X.
0.157.80.75At5g37360833710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.H.G.S.X.
0.157.80.73At5g50920835165CLPC1Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.O.I.H.G.S.X.
0.146.80.71At5g18760831994zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast;MPFOVO.I.H.G.S.X.
0.146.80.71At5g61810836303mitochondrial substrate carrier family proteinF:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, membrane;MFPOBVO.I.H.G.S.X.
0.146.80.72At2g29650817515PHT4Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.O.I.H.G.S.X.
0.146.80.71At4g28740828995-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.146.80.72At1g13930837953-Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.O.I.H.G.S.X.
0.135.80.72At3g19170821451ATPREP1 (PRESEQUENCE PROTEASE 1)Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowersO.I.H.G.S.X.
0.135.80.71At4g36530829805hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAVO.I.H.G.S.X.
0.135.80.71At3g06510819829SFR2 (SENSITIVE TO FREEZING 2)Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezingO.I.H.G.S.X.
0.135.80.72At2g39930818580ISA1 (ISOAMYLASE 1)Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.O.I.H.G.S.X.
0.124.90.72At1g75370843873SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putativeF:transporter activity;P:transport;C:plasma membrane;MPFOO.I.H.G.S.X.
0.124.90.70At1g54520841894unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOMO.I.H.G.S.X.
0.114.10.70At5g60600836181HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.O.I.H.G.S.X.
0.114.10.70At2g43020818904ATPAO2 (Polyamine oxidase 2)F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFAO.I.H.G.S.X.
0.114.10.72At2g30950817646VAR2 (VARIEGATED 2)Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.O.I.H.G.S.X.
0.114.10.70At2g24820817019TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55)F:electron carrier activity, oxidoreductase activity, 2 iron, 2 sulfur cluster binding;P:oxidation reduction;C:chloroplast, chloroplast envelope;BOPMFAO.I.H.G.S.X.
0.103.40.73At5g53350835416CLPXCLP protease regulatory subunit CLPX mRNA, nuclear geneO.I.H.G.S.X.
0.082.30.70At1g27385839628unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.H.G.S.X.
0.082.30.70At5g53130835393CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)member of Cyclic nucleotide gated channel familyO.I.H.G.S.X.
0.082.30.71At5g60360836158AALP (Arabidopsis aleurain-like protease)Encodes a senescence-associated thiol protease.O.I.H.G.S.X.
0.061.40.70At4g29010829022AIM1 (ABNORMAL INFLORESCENCE MERISTEM)Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activitiesO.I.H.G.S.X.
0.051.10.71At1g12050837757fumarylacetoacetase, putativeF:fumarylacetoacetase activity, catalytic activity;P:aromatic amino acid family metabolic process, metabolic process;C:cellular_component unknown;BOMFAPO.I.H.G.S.X.
0.051.10.71At3g29760822663NLI interacting factor (NIF) family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVO.I.H.G.S.X.
0.051.10.71At3g02720820875DJ-1 family protein / protease-relatedF:hydrolase activity, acting on glycosyl bonds;P:biological_process unknown;C:cellular_component unknown;BOAPMFO.I.H.G.S.X.
0.030.60.71At4g01550828144anac069 (Arabidopsis NAC domain containing protein 69)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.599.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
52.199.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.099.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
48.799.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.599.8GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
39.499.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.699.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.999.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.699.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.599.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.499.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
34.599.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.899.7E-MEXP-807-raw-cel-1173273252
33.799.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.299.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.899.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
31.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.999.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.199.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.999.7GSM133777Lindsey_1-4_globular-basal_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
29.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.999.7E-MEXP-807-raw-cel-1173273144
28.999.7GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
28.599.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.099.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.599.6GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
22.499.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.999.5E-ATMX-35-raw-cel-1574334832
18.099.5E-ATMX-35-raw-cel-1574334816
16.599.5GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.099.4GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.099.4GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.399.4E-ATMX-35-raw-cel-1574334800
12.599.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
12.399.3GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
12.099.3GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.799.3GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.999.2GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
10.999.2GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.499.2GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.899.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.199.1E-MEXP-1443-raw-cel-1581869573
8.799.0E-ATMX-1-raw-cel-1112746095
8.799.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0442GO:0010021The chemical reactions and pathways resulting in the formation of amylopectin, the (1,4) linked alpha glucose units with alpha-(1,6) linkages.Link to AmiGO
0.0442GO:0010304The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II.Link to AmiGO
0.0332GO:0009845The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.053400945Stilbenoid, diarylheptanoid and gingerol biosynthesisLink to KEGG PATHWAY
0.052400903Limonene and pinene degradationLink to KEGG PATHWAY
0.037200350Tyrosine metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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