Co-expression analysis

Gene ID At3g26200
Gene name CYP71B22
Module size 5 genes
NF 0.39
%ile 54.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2726.21.00At3g26200822221CYP71B22putative cytochrome P450O.I.H.G.S.X.
0.6781.60.57At3g23550821934MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.H.G.S.X.
0.6781.60.56At5g61160836237AACT1 (anthocyanin 5-aromatic acyltransferase 1)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.4050.80.57At1g06160837125ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.O.I.H.G.S.X.
0.3338.10.60At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.299.8E-ATMX-35-raw-cel-1574334832
26.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.899.7E-ATMX-35-raw-cel-1574334816
17.799.5GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
16.699.5GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.199.5E-ATMX-35-raw-cel-1574334800
15.499.5GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.999.4GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
11.599.3GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.599.2GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.099.2GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.199.1GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
9.099.1GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.099.1GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
8.699.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0009861The jasmonic acid and ethylene (ethene) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen.Link to AmiGO
0.0431GO:0009873A series of molecular signals mediated by ethylene (ethene).Link to AmiGO
0.0281GO:0006855The directed movement of drugs across a membrane into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.028100945Stilbenoid, diarylheptanoid and gingerol biosynthesisLink to KEGG PATHWAY
0.027100903Limonene and pinene degradationLink to KEGG PATHWAY

Inter-species module comparison

A co-expression module including the maize gene, Zm.6456.2.A1_at, orthologous to the query gene, At3g26200

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8896.7Zm.6456.2.A1_at---3e+0At3g21590-O.I.H.G.S.X.
0.5166.4Zm.10429.1.S1_at-hypothetical protein LOC100194282-2e+1At5g37480unknown proteinO.I.H.G.S.X.
0.4861.3Zm.8401.2.S1_at---1e+1At5g48175unknown proteinO.I.H.G.S.X.
0.4759.9Zm.18407.1.A1_at---1e+0At5g39640unknown proteinO.I.H.G.S.X.
0.4455.7Zm.15474.2.A1_x_at-flower-specific gamma-thionin-1e+0At2g41225unknown proteinO.I.H.G.S.X.
0.4455.7Zm.6655.2.A1_at---6e+0At3g45960ATEXLA3 (arabidopsis thaliana expansin-like a3)O.I.H.G.S.X.
0.4352.8Zm.16935.1.S1_at-hypothetical protein LOC100193218-2e+0At4g22650-O.I.H.G.S.X.
0.3945.6Zm.18117.1.S1_at-hypothetical protein LOC100191821-1e-2At3g17440NPSN13 (NOVEL PLANT SNARE 13)O.I.H.G.S.X.
0.3945.6Zm.1119.1.A1_at---1e-2At1g78922unknown proteinO.I.H.G.S.X.
0.3641.3Zm.14057.2.S1_x_at---8e-20At4g22910FZR2 (FIZZY-RELATED 2)O.I.H.G.S.X.
0.3029.8Zm.10090.2.A1_x_at---4e+0At4g24930thylakoid lumenal 17.9 kDa protein, chloroplastO.I.H.G.S.X.
0.3029.8Zm.5720.1.A1_at-hypothetical protein LOC100272300-4e-4At1g21350antioxidant/ oxidoreductaseO.I.H.G.S.X.
0.2928.1Zm.1054.1.A1_at---2e+0At2g25770unknown proteinO.I.H.G.S.X.
0.2928.1Zm.1411.1.S1_at---7e-2At1g17330metal-dependent phosphohydrolase HD domain-containing protein-relatedO.I.H.G.S.X.
0.2928.1Zm.17858.1.S1_at-hypothetical protein AY111541-2e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.2828.1Zm.6755.2.A1_at---2e-1At4g39360unknown proteinO.I.H.G.S.X.
0.2828.1Zm.5503.1.A1_at-hypothetical protein LOC100192784-9e-3At4g35920MCA1 (mid1-complementing activity 1)O.I.H.G.S.X.
0.2724.6Zm.2013.1.S1_a_at-hypothetical protein LOC100274810-5e+0At4g06479nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.2521.3Zm.5797.2.A1_a_at-ultraviolet-B-repressible protein-9e-5At2g06520PSBX (photosystem II subunit X)O.I.H.G.S.X.
0.2521.3Zm.16532.2.A1_at-60S ribosomal protein L18a-4e-69At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.2419.8Zm.6494.1.A1_at-protein transport protein SEC61 gamma subunit /// mitochondria fission 1 protein-2e+0At5g51510unknown proteinO.I.H.G.S.X.
0.2318.6Zm.4034.1.A1_at---3e-7At1g55680WD-40 repeat family proteinO.I.H.G.S.X.
0.2115.5Zm.16853.1.A1_at---2e-18At5g05920DHS (DEOXYHYPUSINE SYNTHASE)O.I.H.G.S.X.
0.2115.5Zm.4563.1.A1_at---2e-1At5g23920unknown proteinO.I.H.G.S.X.
0.1811.6Zm.9282.1.A1_at-WRKY74 - superfamily of TFs having WRKY and zinc finger domains-5e+0At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.158.6Zm.5194.1.A1_at---1e-3At2g46070MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)O.I.H.G.S.X.
0.125.9Zm.4164.2.A1_at---6e+0At4g19640ARA7O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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