Co-expression analysis

Gene ID At3g25790
Gene name myb family transcription factor
Module size 20 genes
NF 0.49
%ile 69.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.4963.51.00At3g25790822170myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.H.G.S.X.
0.7083.50.69At3g45530823694DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.6579.60.73At5g43040834319DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.H.G.S.X.
0.6075.70.70At1g55430841990DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.5974.70.80At4g13130826927DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast envelope;PMOO.I.H.G.S.X.
0.5873.80.67At3g27950822419early nodule-specific protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.H.G.S.X.
0.5873.80.72At1g44050841006DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5673.00.70At3g07000819885DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.5267.40.73At3g46720823825UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.H.G.S.X.
0.5267.40.66At1g33610840255protein bindingF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVO.I.H.G.S.X.
0.5166.30.70At1g66450842963DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.4761.20.66At1g55390841986DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVAO.I.H.G.S.X.
0.4659.80.73At2g27010817243CYP705A9member of CYP705AO.I.H.G.S.X.
0.4457.20.67At1g61840842481DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.H.G.S.X.
0.4355.30.66At3g21680821722unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.4355.30.66At1g55700842019DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOO.I.H.G.S.X.
0.3948.40.66At3g62280825401carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.H.G.S.X.
0.3643.60.71At5g01490831754CAX4 (CATION EXCHANGER 4)Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family.O.I.H.G.S.X.
0.3439.80.69At3g23190821897lesion inducing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.3133.80.65At1g55380841985DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
187.8100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
186.9100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
148.999.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
142.999.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
98.099.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
59.899.8GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
57.499.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.799.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
55.199.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
53.399.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.399.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.199.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.499.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.599.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.999.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.999.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.499.8GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination StudyLink to GEO
35.899.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.799.7GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
29.399.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.299.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.499.6GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
20.599.6E-MEXP-1474-raw-cel-1593932513
20.199.6E-MEXP-1474-raw-cel-1593932705
19.399.6GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
19.299.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.999.5GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
17.699.5GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
16.699.5E-MEXP-1474-raw-cel-1593932673
15.999.5GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
15.099.4GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
14.999.4GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
14.499.4E-MEXP-1474-raw-cel-1593932609
14.399.4GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
13.799.4GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
13.799.4GSM265422Arabidopsis, root, longitudinal zone 3, standard conditions, rep1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
12.099.3GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.799.3GSM131611ATGE_43_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.799.3E-ATMX-1-raw-cel-1112746209
11.699.3GSM131610ATGE_43_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.599.3GSM67084Arabidopsis_Stigma01GSE3056Arabidopsis Pollination StudyLink to GEO
11.599.3E-MEXP-1474-raw-cel-1593932481
10.999.2GSM131609ATGE_43_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.599.2E-ATMX-1-raw-cel-1112746267
9.699.1GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatmentLink to GEO
9.699.1E-MEXP-1474-raw-cel-1593932897
9.699.1E-MEXP-1474-raw-cel-1593932577
8.899.0E-MEXP-1474-raw-cel-1593932737
8.799.0GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0855GO:0007242A series of reactions within the cell that occur as a result of a single trigger reaction or compound.Link to AmiGO
0.0541GO:0006816The directed movement of calcium (Ca) ions into, out of, within or between cells.Link to AmiGO
0.0201GO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage