Co-expression analysis

Gene ID At3g25560
Gene name NIK2 (NSP-INTERACTING KINASE 2)
Module size 59 genes
NF 0.17
%ile 14.5



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g25560822143NIK2 (NSP-INTERACTING KINASE 2)F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.3338.10.82At3g51950824358zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.2930.30.81At4g10180826609DET1 (DE-ETIOLATED 1)Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.O.I.H.G.S.X.
0.2726.20.80At1g63670842671unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBFAVO.I.H.G.S.X.
0.2522.60.84At5g48800834938phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.H.G.S.X.
0.2319.30.80At3g20070821546TTN9 (TITAN9)Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.O.I.H.G.S.X.
0.2319.30.81At3g12010820375-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.H.G.S.X.
0.2319.30.82At3g44940823629unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBO.I.H.G.S.X.
0.2319.30.81At2g31450817703endonuclease-relatedF:4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFPO.I.H.G.S.X.
0.2217.50.81At1g59750842268ARF1 (AUXIN RESPONSE FACTOR 1)Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence.ARF1:LUC and 3xHA:ARF1 proteins have a half-life of ~3-4 hours and their degradation is reduced by proteasome inhibitors. 3xHA:ARF1 degradation is not affected by a pre-treatment with IAA. A nuclear-targeted fusion protein containing the middle region of ARF1 linked to LUC:NLS has a similar half-life to the full-length ARF1:LUC construct. The degradation of 3xHA:ARF1 is not affected in an axr6-3 mutant grown at room temperature, although the degradation of AXR2/IAA7 is slowed under these conditions.O.I.H.G.S.X.
0.2217.50.83At1g33080840204MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.H.G.S.X.
0.2115.80.81At5g19670832087exostosin family proteinF:catalytic activity;P:biological_process unknown;C:membrane;PMOBFO.I.H.G.S.X.
0.2115.80.80At4g35920829747MCA1 (mid1-complementing activity 1)Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.O.I.H.G.S.X.
0.2115.80.83At1g13940837954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.H.G.S.X.
0.2115.80.80At4g26640828771WRKY20member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.2014.40.80At3g12750820457ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.O.I.H.G.S.X.
0.2014.40.81At2g29510817500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.H.G.S.X.
0.2014.40.80At5g49230834983HRB1 (HYPERSENSITIVE TO RED AND BLUE)Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.O.I.H.G.S.X.
0.2014.40.85At5g51350835209leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAVO.I.H.G.S.X.
0.2014.40.81At4g29720829093ATPAO5 (Polyamine oxidase 5)F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:endomembrane system;MBFOPO.I.H.G.S.X.
0.1912.70.80At4g14760827131-F:unknown;P:unknown;C:nucleus;MOBFPAVO.I.H.G.S.X.
0.1912.70.84At2g28810817430Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBO.I.H.G.S.X.
0.1912.70.81At3g57170824884N-acetylglucosaminyl transferase component family protein / Gpi1 family proteinF:transferase activity, phosphatidylinositol N-acetylglucosaminyltransferase activity;P:GPI anchor biosynthetic process;C:endomembrane system, integral to membrane;MFOPO.I.H.G.S.X.
0.1912.70.80At4g27180828826ATK2 (ARABIDOPSIS THALIANA KINESIN 2)kinesin heavy chain subunitO.I.H.G.S.X.
0.1912.70.80At5g01840831813OFP1 (OVATE FAMILY PROTEIN 1)Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.O.I.H.G.S.X.
0.1811.40.80At2g32950817857COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.O.I.H.G.S.X.
0.1811.40.80At2g29970817547heat shock protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BOPFAMO.I.H.G.S.X.
0.1811.40.82At5g65700836699BAM1 (BARELY ANY MERISTEM 1)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.O.I.H.G.S.X.
0.1710.20.80At5g15790831435zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFVO.I.H.G.S.X.
0.1710.20.80At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBO.I.H.G.S.X.
0.1710.20.80At5g22700832333F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.1710.20.80At2g20100816529ethylene-responsive family proteinF:transcription regulator activity;P:regulation of transcription;C:nucleus;POMFVO.I.H.G.S.X.
0.1710.20.80At3g25500822136AFH1 (FORMIN HOMOLOGY 1)Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.O.I.H.G.S.X.
0.168.80.81At4g32560829391paramyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPVO.I.H.G.S.X.
0.157.80.81At1g79030844244DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.157.80.80At5g55390835632EDM2Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression.O.I.H.G.S.X.
0.157.80.80At1g80690844408unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.157.80.81At3g55480824714adaptin family proteinF:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOPO.I.H.G.S.X.
0.157.80.81At1g48380841258RHL1 (ROOT HAIRLESS 1)Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.O.I.H.G.S.X.
0.146.80.81At3g51630824326WNK5 (WITH NO LYSINE (K) KINASE 5)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.O.I.H.G.S.X.
0.146.80.80At4g35870829741-F:molecular_function unknown;P:protein targeting to vacuole;C:membrane;MPFOO.I.H.G.S.X.
0.146.80.80At2g35155818082catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBO.I.H.G.S.X.
0.146.80.80At5g09740830834HAM2 (histone acetyltransferase of the MYST family 2)Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.O.I.H.G.S.X.
0.146.80.80At4g08980826476F-box family protein (FBW2)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.146.80.81At2g35110818077GRL (GNARLED)Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs.O.I.H.G.S.X.
0.135.80.80At4g02680828205EOL1 (ETO1-LIKE 1)Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5.O.I.H.G.S.X.
0.135.80.80At3g15120820743AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAVO.I.H.G.S.X.
0.135.80.80At1g58230842191WD-40 repeat family protein / beige-relatedF:unknown;P:signal transduction;C:mitochondrion;MBOFPAO.I.H.G.S.X.
0.135.80.80At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.124.90.80At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.124.90.80At4g39170830072SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeF:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFOO.I.H.G.S.X.
0.124.90.81At3g12590820439unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POMO.I.H.G.S.X.
0.114.10.81At1g56230842076unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFOO.I.H.G.S.X.
0.114.10.81At3g09900820148ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.
0.114.10.81At2g22310816763ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.103.40.80At5g63200836441tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFPO.I.H.G.S.X.
0.103.40.80At3g03040821150F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.092.80.80At3g16060820851kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:nucleus, plasma membrane;MOPFBO.I.H.G.S.X.
0.071.90.80At1g26100839151cytochrome B561 family proteinF:carbon-monoxide oxygenase activity;P:unknown;C:endomembrane system, integral to membrane;MPOFO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
94.599.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
83.299.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
73.199.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
66.699.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
52.799.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
50.699.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
48.699.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
47.899.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.399.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.999.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.999.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.199.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.599.8E-MEXP-1443-raw-cel-1581869573
40.399.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.199.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
39.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
38.799.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.699.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
36.999.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
28.399.7GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
26.799.7GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
25.699.7GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
24.199.6GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
22.499.6GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
22.099.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.699.6E-MEXP-1443-raw-cel-1581869515
21.399.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.699.6GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
18.299.5GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
16.499.5GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
16.199.5GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
14.599.4GSM131325AtGen_6-3521_Saltstress-Roots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
13.599.4GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.299.4GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.299.4GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.199.4GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
12.599.3E-MEXP-1344-raw-cel-1559561563
12.399.3GSM133302NO.27GSE5699AtGenExpress: ARR21C overexpressionLink to GEO
12.299.3GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.599.3GSM133300NO.25GSE5699AtGenExpress: ARR21C overexpressionLink to GEO
10.999.2E-MEXP-1345-raw-cel-1559561199
10.599.2E-MEXP-1345-raw-cel-1559561169
10.199.2GSM133301NO.26GSE5699AtGenExpress: ARR21C overexpressionLink to GEO
9.699.1GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
9.599.1GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
9.299.1GSM131643ATGE_2_AGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
9.199.1E-MEXP-1345-raw-cel-1559561139
9.099.1GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
8.699.0GSM131644ATGE_2_BGSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0452GO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.Link to AmiGO
0.0372GO:0007018Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.Link to AmiGO
0.0331GO:0007638Behavior that is dependent upon the sensation of a mechanical stimulus.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.025204120Ubiquitin mediated proteolysisLink to KEGG PATHWAY
0.021103410Base excision repairLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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