CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g24540

Gene name protein kinase family protein

Module size 45 genes

NF 0.40

%ile 55.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At3g24540 822050 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. H.G. S.X.
0.65 79.6 0.81 At2g46980 819312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV O.I. H.G. S.X.
0.63 78.1 0.83 At5g08490 830748 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. H.G. S.X.
0.59 74.7 0.81 At5g63390 836458 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.57 73.8 0.80 At1g54700 841911 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.55 70.6 0.82 At2g07686 3768051 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.52 67.4 0.82 At4g10845 826681 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.52 67.4 0.82 At1g74480 843789 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM O.I. H.G. S.X.
0.50 65.3 0.80 At3g49280 824089 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.81 At1g01410 837547 APUM22 (Arabidopsis Pumilio 22) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFM O.I. H.G. S.X.
0.49 63.5 0.82 At2g15660 816059 AGL95 (AGAMOUS-LIKE 95) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P O.I. H.G. S.X.
0.47 61.2 0.82 At2g35970 818170 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.47 61.2 0.84 At2g07737 3768151 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.82 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB O.I. H.G. S.X.
0.43 55.3 0.80 At1g55060 841949 UBQ12 (UBIQUITIN 12) Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product O.I. H.G. S.X.
0.43 55.3 0.83 At3g61730 825346 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.43 55.3 0.82 At4g18490 827581 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA O.I. H.G. S.X.
0.42 53.9 0.81 At2g07706 815381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.42 53.9 0.82 At1g09410 837463 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. H.G. S.X.
0.41 52.4 0.82 At2g07697 3768071 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 0.84 At2g07713 815387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.39 48.4 0.81 At1g47730 841184 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. H.G. S.X.
0.38 46.7 0.81 At3g59180 825087 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.38 46.7 0.80 At5g37640 833742 UBQ9 polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. O.I. H.G. S.X.
0.38 46.7 0.81 At1g65120 842819 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV O.I. H.G. S.X.
0.38 46.7 0.81 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.37 45.0 0.81 At1g35050 3766928 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.37 45.0 0.81 At2g07691 815367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.37 45.0 0.81 At2g26790 817220 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFBAV O.I. H.G. S.X.
0.36 43.6 0.80 At1g49100 841333 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.36 43.6 0.82 At2g43730 818975 lectin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.36 43.6 0.82 At5g07760 830669 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVA O.I. H.G. S.X.
0.35 41.6 0.81 At5g40130 3771383 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 0.80 At1g11690 837713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. H.G. S.X.
0.35 41.6 0.83 At2g07685 3768050 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 0.81 At1g18310 838411 glycosyl hydrolase family 81 protein F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPM O.I. H.G. S.X.
0.34 39.8 0.80 At2g34580 818022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV O.I. H.G. S.X.
0.33 38.1 0.81 At1g12720 3766711 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 0.81 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. H.G. S.X.
0.32 35.7 0.81 At2g05640 3768197 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.30 32.1 0.82 At3g49440 824106 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.28 30.3 0.82 At5g07310 830622 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. H.G. S.X.
0.27 26.2 0.82 At4g07360 3770409 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.24 20.7 0.81 At1g34140 840313 PAB1 (POLY(A) BINDING PROTEIN 1) polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family. O.I. H.G. S.X.
0.17 10.2 0.81 At3g43470 823432 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At3g24540	822050	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	H.G.	S.X.
0.65	79.6	0.81	At2g46980	819312	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV	O.I.	H.G.	S.X.
0.63	78.1	0.83	At5g08490	830748	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	H.G.	S.X.
0.59	74.7	0.81	At5g63390	836458	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.57	73.8	0.80	At1g54700	841911	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.55	70.6	0.82	At2g07686	3768051	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.52	67.4	0.82	At4g10845	826681	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	H.G.	S.X.
0.52	67.4	0.82	At1g74480	843789	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POFM	O.I.	H.G.	S.X.
0.50	65.3	0.80	At3g49280	824089	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.81	At1g01410	837547	APUM22 (Arabidopsis Pumilio 22)	F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;POFM	O.I.	H.G.	S.X.
0.49	63.5	0.82	At2g15660	816059	AGL95 (AGAMOUS-LIKE 95)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	H.G.	S.X.
0.47	61.2	0.82	At2g35970	818170	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.47	61.2	0.84	At2g07737	3768151	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.82	At5g38500	833838	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB	O.I.	H.G.	S.X.
0.43	55.3	0.80	At1g55060	841949	UBQ12 (UBIQUITIN 12)	Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product	O.I.	H.G.	S.X.
0.43	55.3	0.83	At3g61730	825346	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.43	55.3	0.82	At4g18490	827581	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA	O.I.	H.G.	S.X.
0.42	53.9	0.81	At2g07706	815381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.42	53.9	0.82	At1g09410	837463	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	H.G.	S.X.
0.41	52.4	0.82	At2g07697	3768071	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	0.84	At2g07713	815387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.39	48.4	0.81	At1g47730	841184	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	H.G.	S.X.
0.38	46.7	0.81	At3g59180	825087	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.38	46.7	0.80	At5g37640	833742	UBQ9	polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements.	O.I.	H.G.	S.X.
0.38	46.7	0.81	At1g65120	842819	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV	O.I.	H.G.	S.X.
0.38	46.7	0.81	At5g18160	831934	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.37	45.0	0.81	At1g35050	3766928	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.37	45.0	0.81	At2g07691	815367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.37	45.0	0.81	At2g26790	817220	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POMFBAV	O.I.	H.G.	S.X.
0.36	43.6	0.80	At1g49100	841333	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.36	43.6	0.82	At2g43730	818975	lectin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.36	43.6	0.82	At5g07760	830669	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVA	O.I.	H.G.	S.X.
0.35	41.6	0.81	At5g40130	3771383	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.35	41.6	0.80	At1g11690	837713	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	H.G.	S.X.
0.35	41.6	0.83	At2g07685	3768050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	0.81	At1g18310	838411	glycosyl hydrolase family 81 protein	F:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:cell wall macromolecule catabolic process;C:unknown;FOBPM	O.I.	H.G.	S.X.
0.34	39.8	0.80	At2g34580	818022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV	O.I.	H.G.	S.X.
0.33	38.1	0.81	At1g12720	3766711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	0.81	At5g66370	836769	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	H.G.	S.X.
0.32	35.7	0.81	At2g05640	3768197	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.30	32.1	0.82	At3g49440	824106	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.28	30.3	0.82	At5g07310	830622	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	H.G.	S.X.
0.27	26.2	0.82	At4g07360	3770409	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.24	20.7	0.81	At1g34140	840313	PAB1 (POLY(A) BINDING PROTEIN 1)	polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family.	O.I.	H.G.	S.X.
0.17	10.2	0.81	At3g43470	823432	nucleic acid binding / zinc ion binding	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.57	73.8	0.75	At2g44800	819089	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	H.G.	S.X.
0.56	73.0	0.74	At3g56890	824856	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.56	73.0	0.76	At5g09930	830854	ATGCN2	member of GCN subfamily	O.I.	H.G.	S.X.
0.54	69.5	0.75	At1g35740	3766959	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.80	At1g76910	844026	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	H.G.	S.X.
0.53	68.6	0.78	At1g05920	837102	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;POMFB	O.I.	H.G.	S.X.
0.53	68.6	0.79	At1g52390	841669	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.51	66.3	0.78	At2g17160	816221	protein kinase-related	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.51	66.3	0.69	At1g26790	839220	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:endomembrane system;POMF	O.I.	H.G.	S.X.
0.51	66.3	0.75	At3g14510	820674	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV	O.I.	H.G.	S.X.
0.50	65.3	0.78	At3g43040	3769523	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.74	At2g19210	816438	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.49	63.5	0.79	At1g59810	842274	AGL50	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	H.G.	S.X.
0.48	62.5	0.77	At2g03880	814914	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFMBA	O.I.	H.G.	S.X.
0.48	62.5	0.73	At3g45840	823727	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.47	61.2	0.80	At3g24330	822022	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBO	O.I.	H.G.	S.X.
0.47	61.2	0.78	At5g61110	836232	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.47	61.2	0.74	At1g47370	841140	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	H.G.	S.X.
0.46	59.8	0.75	At3g19880	821525	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	0.76	At5g43410	834360	ethylene-responsive factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	H.G.	S.X.
0.45	58.3	0.74	At3g05720	819741	IMPA-7 (IMPORTIN ALPHA ISOFORM 7)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	H.G.	S.X.
0.45	58.3	0.77	At2g02300	814761	AtPP2-B5 (Phloem protein 2-B5)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	0.77	At3g26620	822274	LBD23 (LOB DOMAIN-CONTAINING PROTEIN 23)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.45	58.3	0.73	At5g07160	830607	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMO	O.I.	H.G.	S.X.
0.45	58.3	0.69	At2g33080	817870	AtRLP28 (Receptor Like Protein 28)	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.45	58.3	0.79	At1g22275	838834	ZYP1b	One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.	O.I.	H.G.	S.X.
0.45	58.3	0.78	At1g03490	839487	ANAC006 (Arabidopsis NAC domain containing protein 6)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOVBF	O.I.	H.G.	S.X.
0.45	58.3	0.76	At4g02320	828067	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM	O.I.	H.G.	S.X.
0.45	58.3	0.76	At1g80730	844412	ZFP1 (ZINC-FINGER PROTEIN 1)	Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.	O.I.	H.G.	S.X.
0.45	58.3	0.80	At1g66170	842932	MMD1 (MALE MEIOCYTE DEATH 1)	encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.	O.I.	H.G.	S.X.
0.44	57.2	0.80	At4g26380	828744	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF	O.I.	H.G.	S.X.
0.44	57.2	0.80	At4g14180	827058	AtPRD1 (Arabidopsis thaliana Putative Recombination initiation Defect 1)	Encodes a protein that is involved in meiotic recombination and is required for meiotic double strand break repair.	O.I.	H.G.	S.X.
0.44	57.2	0.78	At1g43290	3767303	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.44	57.2	0.73	At3g15870	820830	oxidoreductase	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	H.G.	S.X.
0.44	57.2	0.74	At5g37560	833734	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.44	57.2	0.79	At2g24000	816934	scpl22 (serine carboxypeptidase-like 22)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	H.G.	S.X.
0.44	57.2	0.79	At4g18720	827606	transcription elongation factor-related	F:zinc ion binding;P:transcription;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.44	57.2	0.79	At1g51480	841573	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFA	O.I.	H.G.	S.X.
0.44	57.2	0.71	At5g17080	831571	cathepsin-related	F:cysteine-type peptidase activity;P:unknown;C:cellular_component unknown;MOPV	O.I.	H.G.	S.X.
0.43	55.3	0.80	At1g70400	843376	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.43	55.3	0.76	At2g14550	3767906	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.43	55.3	0.71	At1g49220	841345	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	H.G.	S.X.
0.43	55.3	0.79	At3g43820	3769603	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.43	55.3	0.74	At3g17290	3768761	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.43	55.3	0.78	At3g55210	824687	anac063 (Arabidopsis NAC domain containing protein 63)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.42	53.9	0.77	At5g06540	830542	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:endomembrane system;POMFB	O.I.	H.G.	S.X.
0.42	53.9	0.75	At4g10150	826606	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.42	53.9	0.79	At3g21040	3768798	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.75	At5g38080	833788	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.42	53.9	0.75	At1g62580	842555	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:intrinsic to endoplasmic reticulum membrane;BOMFPA	O.I.	H.G.	S.X.

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.5 99.8 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.1 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
51.4 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.9 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.9 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
45.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.3 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.2 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.7 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.6 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.0 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.2 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.2 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.3 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.9 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.0 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.3 99.7 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
34.1 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.2 99.7 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
31.8 99.7 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
26.5 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.3 99.6 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.8 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.1 99.6 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
21.7 99.6 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.6 99.6 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.9 99.5 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.5 99.5 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.1 99.5 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
15.8 99.5 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.3 99.4 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.1 99.4 E-MEXP-1592-raw-cel-1617526984
12.9 99.3 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
11.9 99.3 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
11.8 99.3 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
11.8 99.3 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
11.3 99.3 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.6 99.2 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
9.9 99.1 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.4 99.1 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.3 99.1 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
9.3 99.1 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
9.3 99.1 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.9 99.0 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.9 99.0 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
8.8 99.0 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
64.5	99.8	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.1	99.8	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
51.4	99.8	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
49.9	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.9	99.8	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
45.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.3	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
42.2	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.7	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.6	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.1	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.0	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
40.0	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.2	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.7	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.2	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.0	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.3	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.9	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.0	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.3	99.7	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
34.1	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.2	99.7	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
31.8	99.7	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
26.5	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.3	99.6	GSM133773	Lindsey_1-25_torpedo-meristem_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.8	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.1	99.6	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
21.7	99.6	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
20.6	99.6	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.9	99.5	GSM133775	Lindsey_1-27_torpedo-meristem_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.5	99.5	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.1	99.5	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
15.8	99.5	GSM184477	Lateral Root Cap root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.3	99.4	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.1	99.4	E-MEXP-1592-raw-cel-1617526984
12.9	99.3	GSM311281	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
11.9	99.3	GSM311296	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
11.8	99.3	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
11.8	99.3	GSM189112	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1	GSE7796	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
11.3	99.3	GSM284396	Arabidopsis GPSc2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
10.6	99.2	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
9.9	99.1	GSM311295	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.4	99.1	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.3	99.1	GSM311282	Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
9.3	99.1	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
9.3	99.1	GSM311293	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.9	99.0	GSM184552	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
8.9	99.0	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
8.8	99.0	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.033 1 GO:0016043 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
0.029 1 GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
0.027 1 GO:0030036 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.

SF	Genes	GO ID	Process Name
0.033	1	GO:0016043	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
0.029	1	GO:0016998	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
0.027	1	GO:0030036	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At3g24540
Gene name	protein kinase family protein
Module size	45 genes
NF	0.40
%ile	55.0

Co-expression analysis

Gene ID At3g24540 Gene name protein kinase family protein Module size 45 genes NF 0.40 %ile 55.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g24540

Gene name protein kinase family protein

Module size 45 genes

NF 0.40

%ile 55.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays