CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g23720

Gene name transposable element gene

Module size 72 genes

NF 0.43

%ile 61.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At3g23720 821953 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.70 83.5 0.87 At1g42410 3767250 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.63 78.1 0.85 At2g07693 3768137 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.62 77.3 0.87 At3g43650 3769589 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.61 76.7 0.85 At2g02290 814760 NLI interacting factor (NIF) family protein F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;OMPF O.I. H.G. S.X.
0.61 76.7 0.86 At2g07736 3768150 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.85 At2g05660 3768558 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.86 At1g19460 838530 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAF O.I. H.G. S.X.
0.58 73.8 0.86 At4g07370 3770410 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.58 73.8 0.86 At5g65330 836658 AGL78 (AGAMOUS-LIKE 78) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POFM O.I. H.G. S.X.
0.58 73.8 0.84 At1g12935 3766713 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.57 73.8 0.87 At2g22940 816825 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.56 73.0 0.83 At3g53290 824496 CYP71B30P missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html O.I. H.G. S.X.
0.56 73.0 0.85 At2g11680 3767822 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.54 69.5 0.83 At4g12160 3770024 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.54 69.5 0.86 At5g17740 831642 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.54 69.5 0.83 At2g02200 3768149 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.85 At3g42900 3769508 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.53 68.6 0.84 At1g35150 840402 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. H.G. S.X.
0.53 68.6 0.86 At3g43470 823432 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.53 68.6 0.83 At5g37030 833673 tRNA-splicing endonuclease positive effector-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. H.G. S.X.
0.52 67.4 0.88 At3g30840 822861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 0.83 At1g35820 840484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 0.85 At2g07692 815368 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 0.86 At1g21860 838788 sks7 (SKU5 Similar 7) F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA O.I. H.G. S.X.
0.52 67.4 0.86 At2g19420 816461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.51 66.3 0.84 At4g08130 826356 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.50 65.3 0.85 At1g43745 3767315 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 0.83 At4g08000 3769934 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 0.83 At1g33830 840278 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein F:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOB O.I. H.G. S.X.
0.49 63.5 0.85 At3g31380 3769188 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.49 63.5 0.84 At2g07701 815376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.48 62.5 0.84 At2g14420 3768298 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 0.83 At2g06160 3767898 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.48 62.5 0.85 At1g60300 842325 apical meristem formation protein-related F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. H.G. S.X.
0.48 62.5 0.83 At2g06230 815179 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.47 61.2 0.83 At2g07673 815345 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.46 59.8 0.84 At2g13950 815879 DC1 domain-containing protein F:protein binding, zinc ion binding;P:response to cold;C:nucleus;PMO O.I. H.G. S.X.
0.45 58.3 0.84 At4g07890 3770066 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.45 58.3 0.86 At3g30845 822868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.45 58.3 0.83 At4g05580 825912 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.44 57.2 0.83 At4g03170 828050 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OPMF O.I. H.G. S.X.
0.43 55.3 0.84 At4g23780 828478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBV O.I. H.G. S.X.
0.43 55.3 0.83 At2g29610 817511 - pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain O.I. H.G. S.X.
0.42 53.9 0.86 At2g12320 815704 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.42 53.9 0.88 At4g07660 3770438 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.41 52.4 0.83 At1g33817 3766904 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.41 52.4 0.84 At1g37060 3767055 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.40 50.8 0.83 At2g07730 3768192 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.39 48.4 0.83 At3g42130 823185 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV O.I. H.G. S.X.
0.37 45.0 0.85 At3g55930 824759 RNA splicing factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB O.I. H.G. S.X.
0.37 45.0 0.83 At4g29710 829092 phosphodiesterase/nucleotide pyrophosphatase-related F:catalytic activity;P:metabolic process;C:cellular_component unknown;MBFPOV O.I. H.G. S.X.
0.37 45.0 0.84 At1g36035 3766971 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 0.83 At1g29620 839839 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.35 41.6 0.86 At4g07640 3770534 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.34 39.8 0.84 At1g37020 840613 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFA O.I. H.G. S.X.
0.32 35.7 0.83 At2g07685 3768050 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 0.85 At2g14320 3768070 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.32 35.7 0.84 At1g43320 840933 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.31 33.8 0.83 At3g29650 3769022 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.31 33.8 0.83 At3g32120 822975 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.31 33.8 0.84 At5g28160 832891 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.31 33.8 0.83 At5g35340 3771268 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.30 32.1 0.84 At1g42630 840870 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.30 32.1 0.83 At4g32375 829372 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;MPBOFVA O.I. H.G. S.X.
0.29 30.3 0.83 At1g43660 840950 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.27 26.2 0.83 At2g07130 3767761 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.26 24.4 0.84 At2g15700 3767804 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.25 22.6 0.85 At3g32130 822976 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.25 22.6 0.83 At2g11590 3768652 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.20 14.4 0.83 At3g29510 3769000 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.17 10.2 0.83 At2g10690 3767864 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At3g23720	821953	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.70	83.5	0.87	At1g42410	3767250	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.63	78.1	0.85	At2g07693	3768137	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.62	77.3	0.87	At3g43650	3769589	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.61	76.7	0.85	At2g02290	814760	NLI interacting factor (NIF) family protein	F:phosphoprotein phosphatase activity;P:biological_process unknown;C:nucleus;OMPF	O.I.	H.G.	S.X.
0.61	76.7	0.86	At2g07736	3768150	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.85	At2g05660	3768558	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.86	At1g19460	838530	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBVOAF	O.I.	H.G.	S.X.
0.58	73.8	0.86	At4g07370	3770410	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.58	73.8	0.86	At5g65330	836658	AGL78 (AGAMOUS-LIKE 78)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POFM	O.I.	H.G.	S.X.
0.58	73.8	0.84	At1g12935	3766713	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.57	73.8	0.87	At2g22940	816825	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.56	73.0	0.83	At3g53290	824496	CYP71B30P	missing N-term 80 AA not found between end of 71B5 and start of this sequence probably a pseudogene, from http://drnelson.utmem.edu/biblioD.html	O.I.	H.G.	S.X.
0.56	73.0	0.85	At2g11680	3767822	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.54	69.5	0.83	At4g12160	3770024	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.54	69.5	0.86	At5g17740	831642	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.54	69.5	0.83	At2g02200	3768149	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.85	At3g42900	3769508	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.53	68.6	0.84	At1g35150	840402	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	H.G.	S.X.
0.53	68.6	0.86	At3g43470	823432	nucleic acid binding / zinc ion binding	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.53	68.6	0.83	At5g37030	833673	tRNA-splicing endonuclease positive effector-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	H.G.	S.X.
0.52	67.4	0.88	At3g30840	822861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	0.83	At1g35820	840484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	0.85	At2g07692	815368	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.52	67.4	0.86	At1g21860	838788	sks7 (SKU5 Similar 7)	F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOA	O.I.	H.G.	S.X.
0.52	67.4	0.86	At2g19420	816461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.51	66.3	0.84	At4g08130	826356	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.50	65.3	0.85	At1g43745	3767315	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.83	At4g08000	3769934	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.83	At1g33830	840278	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	F:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOB	O.I.	H.G.	S.X.
0.49	63.5	0.85	At3g31380	3769188	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.49	63.5	0.84	At2g07701	815376	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.48	62.5	0.84	At2g14420	3768298	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	0.83	At2g06160	3767898	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.48	62.5	0.85	At1g60300	842325	apical meristem formation protein-related	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.48	62.5	0.83	At2g06230	815179	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.47	61.2	0.83	At2g07673	815345	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.46	59.8	0.84	At2g13950	815879	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:response to cold;C:nucleus;PMO	O.I.	H.G.	S.X.
0.45	58.3	0.84	At4g07890	3770066	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.45	58.3	0.86	At3g30845	822868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.45	58.3	0.83	At4g05580	825912	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.44	57.2	0.83	At4g03170	828050	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OPMF	O.I.	H.G.	S.X.
0.43	55.3	0.84	At4g23780	828478	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBV	O.I.	H.G.	S.X.
0.43	55.3	0.83	At2g29610	817511	-	pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain	O.I.	H.G.	S.X.
0.42	53.9	0.86	At2g12320	815704	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.42	53.9	0.88	At4g07660	3770438	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.41	52.4	0.83	At1g33817	3766904	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.41	52.4	0.84	At1g37060	3767055	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.40	50.8	0.83	At2g07730	3768192	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.39	48.4	0.83	At3g42130	823185	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFV	O.I.	H.G.	S.X.
0.37	45.0	0.85	At3g55930	824759	RNA splicing factor-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	O.I.	H.G.	S.X.
0.37	45.0	0.83	At4g29710	829092	phosphodiesterase/nucleotide pyrophosphatase-related	F:catalytic activity;P:metabolic process;C:cellular_component unknown;MBFPOV	O.I.	H.G.	S.X.
0.37	45.0	0.84	At1g36035	3766971	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.35	41.6	0.83	At1g29620	839839	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.35	41.6	0.86	At4g07640	3770534	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.34	39.8	0.84	At1g37020	840613	Ulp1 protease family protein	F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFA	O.I.	H.G.	S.X.
0.32	35.7	0.83	At2g07685	3768050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	0.85	At2g14320	3768070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.32	35.7	0.84	At1g43320	840933	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.31	33.8	0.83	At3g29650	3769022	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.31	33.8	0.83	At3g32120	822975	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.31	33.8	0.84	At5g28160	832891	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	H.G.	S.X.
0.31	33.8	0.83	At5g35340	3771268	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.30	32.1	0.84	At1g42630	840870	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.30	32.1	0.83	At4g32375	829372	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;MPBOFVA	O.I.	H.G.	S.X.
0.29	30.3	0.83	At1g43660	840950	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.27	26.2	0.83	At2g07130	3767761	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.26	24.4	0.84	At2g15700	3767804	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.25	22.6	0.85	At3g32130	822976	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.25	22.6	0.83	At2g11590	3768652	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.20	14.4	0.83	At3g29510	3769000	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.17	10.2	0.83	At2g10690	3767864	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
52.6 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.2 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.9 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
44.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.0 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.1 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.2 99.8 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.9 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.4 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.5 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.2 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
33.5 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.8 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
32.1 99.7 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.7 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.5 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.5 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.7 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.0 99.7 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
26.8 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.8 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.6 99.6 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
19.8 99.6 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
17.1 99.5 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
15.3 99.4 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
14.9 99.4 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.7 99.4 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
13.2 99.4 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.9 99.3 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.6 99.3 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.5 99.3 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.0 99.2 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
9.4 99.1 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
70.4	99.9	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
52.6	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.0	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.2	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.7	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.9	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
44.4	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.0	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.1	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.2	99.8	GSM133757	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
41.9	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.4	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.3	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.1	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.4	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3	99.8	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.5	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.2	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
33.5	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.8	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
32.1	99.7	GSM133781	Lindsey_1-6_globular-basal_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.7	99.7	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.5	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
31.5	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.7	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.0	99.7	GSM311276	Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
26.8	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.8	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.6	99.6	GSM311275	Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
19.8	99.6	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
17.1	99.5	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
15.3	99.4	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
14.9	99.4	GSM184478	Lateral Root Cap root cells 2hr KCl control treated, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.9	99.4	GSM184477	Lateral Root Cap root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.7	99.4	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
13.2	99.4	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
12.9	99.3	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
12.6	99.3	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
12.5	99.3	GSM184483	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.0	99.2	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
9.4	99.1	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009617 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.015	1	GO:0009617	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.014 1 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
0.014 1 00903 Limonene and pinene degradation

SF	Genes	KEGG ID	Pathway name	Link to KEGG
0.014	1	00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis
0.014	1	00903	Limonene and pinene degradation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At3g23720
Gene name	transposable element gene
Module size	72 genes
NF	0.43
%ile	61.1

Co-expression analysis

Gene ID At3g23720 Gene name transposable element gene Module size 72 genes NF 0.43 %ile 61.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0151GO:0009617A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.014100945Stilbenoid, diarylheptanoid and gingerol biosynthesis0.014100903Limonene and pinene degradation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g23720

Gene name transposable element gene

Module size 72 genes

NF 0.43

%ile 61.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009617 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.

SF Genes KEGG ID Pathway name Link to KEGG
0.014 1 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
0.014 1 00903 Limonene and pinene degradation

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays