Co-expression analysis

Gene ID At3g21840
Gene name ASK7 (ARABIDOPSIS SKP1-LIKE 7)
Module size 22 genes
NF 0.89
%ile 98.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g21840821738ASK7 (ARABIDOPSIS SKP1-LIKE 7)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOVO.I.H.G.S.X.
1.00100.00.96At1g61090842401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
1.00100.00.96At3g10590820227myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMO.I.H.G.S.X.
1.00100.00.98At4g22400828335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
1.00100.00.95At4g29570829078cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.9897.80.88At3g11870820360protein kinase-relatedF:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVAO.I.H.G.S.X.
0.9897.80.94At3g21860821740ASK10 (ARABIDOPSIS SKP1-LIKE 10)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVO.I.H.G.S.X.
0.9897.80.83At4g29640829085cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.9597.00.88At1g73000843631-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.9396.40.93At1g31290840017PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.9195.60.82At4g29650829086cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseF:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.9095.10.95At3g21830821737ASK8 (ARABIDOPSIS SKP1-LIKE 8)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVO.I.H.G.S.X.
0.8994.60.91At1g20680838656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBMO.I.H.G.S.X.
0.8391.40.74At4g29630829084cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFAO.I.H.G.S.X.
0.8290.90.90At4g29620829083cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAFO.I.H.G.S.X.
0.8089.80.84At1g12180837771-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8089.80.88At1g51000841522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8089.80.80At4g29600829081cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPAFO.I.H.G.S.X.
0.7788.00.80At3g13630820567unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.H.G.S.X.
0.7687.40.84At4g22050828294aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOPO.I.H.G.S.X.
0.7385.50.79At5g66660836798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.H.G.S.X.
0.6781.60.78At5g18090831636transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.599.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.999.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
34.999.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.899.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.199.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.899.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.399.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.399.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.299.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.299.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.299.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.899.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.599.7GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
28.399.7GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
28.099.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.099.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.699.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
25.199.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.199.6GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
24.099.6GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.899.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.799.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.599.6GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
20.799.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
19.399.6GSM106833opr3_JA_0.5 hr_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
19.199.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.699.5GSM142655MC002_ATH1_A11.3-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
17.199.5GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
16.999.5GSM142653MC002_ATH1_A11.1-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
16.699.5GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
15.699.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.399.4GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.399.4GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
15.199.4GSM142654MC002_ATH1_A11.2-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
14.399.4GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.299.4GSM134459St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0Link to GEO
12.899.3GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
12.599.3GSM134385St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5754Expression Level Polymorphism Project (ELP) - EstLink to GEO
12.499.3GSM134387St.Clair_1-48_397_Est_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5754Expression Level Polymorphism Project (ELP) - EstLink to GEO
12.099.3GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.999.3E-MEXP-1474-raw-cel-1593932705
11.699.3GSM134386St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5754Expression Level Polymorphism Project (ELP) - EstLink to GEO
11.599.3E-MEXP-1592-raw-cel-1617526968
11.499.3GSM106827opr3_0 hr_Rep2GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.799.1E-MEXP-1592-raw-cel-1617526864
9.499.1GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.899.0E-MEXP-1474-raw-cel-1593932609

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.3455GO:0046087The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside.Link to AmiGO
0.3335GO:0009972The removal of amino group in the presence of water.Link to AmiGO
0.0871GO:0008655Any process that generates a pyrimidine, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.050304120Ubiquitin mediated proteolysisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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