CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g21000

Gene name unknown protein

Module size 34 genes

NF 0.55

%ile 76.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.83 91.4 1.00 At3g21000 821651 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. H.G. S.X.
0.70 83.5 0.82 At1g32850 840179 UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11) F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPVB O.I. H.G. S.X.
0.70 83.5 0.87 At1g07060 837217 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.69 82.9 0.86 At5g28340 832919 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. H.G. S.X.
0.63 78.1 0.85 At3g51690 824332 - DNA helicase homolog PIF1. O.I. H.G. S.X.
0.60 75.7 0.85 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. H.G. S.X.
0.60 75.7 0.84 At4g38940 830049 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA O.I. H.G. S.X.
0.58 73.8 0.83 At1g52920 841725 GPCR (G PROTEIN COUPLED RECEPTOR) Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses. O.I. H.G. S.X.
0.58 73.8 0.84 At1g68120 843140 BPC3 (BASIC PENTACYSTEINE 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P O.I. H.G. S.X.
0.57 73.8 0.83 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family O.I. H.G. S.X.
0.57 73.8 0.83 At4g39753 830132 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF O.I. H.G. S.X.
0.56 73.0 0.83 At2g21930 816729 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.56 73.0 0.84 At2g22600 816791 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO O.I. H.G. S.X.
0.56 73.0 0.84 At5g05510 830434 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. H.G. S.X.
0.55 70.6 0.83 At1g55410 3767461 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.55 70.6 0.90 At5g52340 835310 ATEXO70A2 (exocyst subunit EXO70 family protein A2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. H.G. S.X.
0.55 70.6 0.84 At5g49150 834974 GEX2 (GAMETE EXPRESSED 2) Encodes a transmembrane domain containing protein expressed in sperm cells. O.I. H.G. S.X.
0.55 70.6 0.82 At1g75770 843910 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.53 68.6 0.82 At5g11080 830975 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVB O.I. H.G. S.X.
0.52 67.4 0.84 At5g07810 830674 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA O.I. H.G. S.X.
0.52 67.4 0.86 At5g22750 832338 RAD5 DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer O.I. H.G. S.X.
0.52 67.4 0.82 At2g17090 816214 SSP (SHORT SUSPENSOR) F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF O.I. H.G. S.X.
0.51 66.3 0.87 At1g50810 3767429 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.51 66.3 0.82 At3g01015 821318 - F:unknown;P:unknown;C:unknown;PMOF O.I. H.G. S.X.
0.51 66.3 0.83 At1g12370 837792 PHR1 (PHOTOLYASE 1) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele O.I. H.G. S.X.
0.51 66.3 0.83 At2g30580 817608 DRIP2 (DREB2A-INTERACTING PROTEIN 2) Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. O.I. H.G. S.X.
0.50 65.3 0.82 At1g54240 841865 DNA binding F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P O.I. H.G. S.X.
0.50 65.3 0.82 At2g37670 818344 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAV O.I. H.G. S.X.
0.50 65.3 0.82 At3g60760 825247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.49 63.5 0.84 At3g10180 820180 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOBFPAV O.I. H.G. S.X.
0.49 63.5 0.81 At1g77410 844078 BGAL16 (beta-galactosidase 16) F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA O.I. H.G. S.X.
0.48 62.5 0.82 At2g06040 815159 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.47 61.2 0.82 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.
0.45 58.3 0.82 At5g25380 832610 CYCA2 core cell cycle genes O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.83	91.4	1.00	At3g21000	821651	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	H.G.	S.X.
0.70	83.5	0.82	At1g32850	840179	UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)	F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPVB	O.I.	H.G.	S.X.
0.70	83.5	0.87	At1g07060	837217	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.69	82.9	0.86	At5g28340	832919	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	H.G.	S.X.
0.63	78.1	0.85	At3g51690	824332	-	DNA helicase homolog PIF1.	O.I.	H.G.	S.X.
0.60	75.7	0.85	At3g12060	820380	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	H.G.	S.X.
0.60	75.7	0.84	At4g38940	830049	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA	O.I.	H.G.	S.X.
0.58	73.8	0.83	At1g52920	841725	GPCR (G PROTEIN COUPLED RECEPTOR)	Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.	O.I.	H.G.	S.X.
0.58	73.8	0.84	At1g68120	843140	BPC3 (BASIC PENTACYSTEINE 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	H.G.	S.X.
0.57	73.8	0.83	At4g32500	829385	AKT5	member of Stelar K+ outward rectifying channel (SKOR) family	O.I.	H.G.	S.X.
0.57	73.8	0.83	At4g39753	830132	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF	O.I.	H.G.	S.X.
0.56	73.0	0.83	At2g21930	816729	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.56	73.0	0.84	At2g22600	816791	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO	O.I.	H.G.	S.X.
0.56	73.0	0.84	At5g05510	830434	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	H.G.	S.X.
0.55	70.6	0.83	At1g55410	3767461	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.55	70.6	0.90	At5g52340	835310	ATEXO70A2 (exocyst subunit EXO70 family protein A2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	H.G.	S.X.
0.55	70.6	0.84	At5g49150	834974	GEX2 (GAMETE EXPRESSED 2)	Encodes a transmembrane domain containing protein expressed in sperm cells.	O.I.	H.G.	S.X.
0.55	70.6	0.82	At1g75770	843910	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.53	68.6	0.82	At5g11080	830975	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVB	O.I.	H.G.	S.X.
0.52	67.4	0.84	At5g07810	830674	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein	F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA	O.I.	H.G.	S.X.
0.52	67.4	0.86	At5g22750	832338	RAD5	DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer	O.I.	H.G.	S.X.
0.52	67.4	0.82	At2g17090	816214	SSP (SHORT SUSPENSOR)	F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF	O.I.	H.G.	S.X.
0.51	66.3	0.87	At1g50810	3767429	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.51	66.3	0.82	At3g01015	821318	-	F:unknown;P:unknown;C:unknown;PMOF	O.I.	H.G.	S.X.
0.51	66.3	0.83	At1g12370	837792	PHR1 (PHOTOLYASE 1)	encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele	O.I.	H.G.	S.X.
0.51	66.3	0.83	At2g30580	817608	DRIP2 (DREB2A-INTERACTING PROTEIN 2)	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	O.I.	H.G.	S.X.
0.50	65.3	0.82	At1g54240	841865	DNA binding	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P	O.I.	H.G.	S.X.
0.50	65.3	0.82	At2g37670	818344	WD-40 repeat family protein	F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAV	O.I.	H.G.	S.X.
0.50	65.3	0.82	At3g60760	825247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.49	63.5	0.84	At3g10180	820180	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOBFPAV	O.I.	H.G.	S.X.
0.49	63.5	0.81	At1g77410	844078	BGAL16 (beta-galactosidase 16)	F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA	O.I.	H.G.	S.X.
0.48	62.5	0.82	At2g06040	815159	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	H.G.	S.X.
0.47	61.2	0.82	At5g05130	830395	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 7 functions;P:unknown;C:unknown;MOBFPVA	O.I.	H.G.	S.X.
0.45	58.3	0.82	At5g25380	832610	CYCA2	core cell cycle genes	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
59.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.5 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.3 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.2 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.6 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.4 99.7 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
33.6 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.4 99.7 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
32.4 99.7 E-ATMX-35-raw-cel-1574334816
31.7 99.7 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.8 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.7 99.6 E-ATMX-35-raw-cel-1574334832
23.5 99.6 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.5 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.4 99.6 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.0 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.8 99.6 E-ATMX-35-raw-cel-1574334800
22.3 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.2 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.3 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.4 99.4 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.2 99.3 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.8 99.2 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.1 99.2 GSM311275 Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
9.9 99.1 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.1 99.1 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.1 99.1 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.1 99.1 GSM311276 Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
8.8 99.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
59.6	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.9	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.5	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.3	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.2	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.6	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.8	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
36.4	99.7	GSM284387	Arabidopsis GSUS4b	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
33.6	99.7	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.4	99.7	GSM284386	Arabidopsis GSUS3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
32.4	99.7	E-ATMX-35-raw-cel-1574334816
31.7	99.7	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
29.8	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.7	99.6	E-ATMX-35-raw-cel-1574334832
23.5	99.6	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.5	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.4	99.6	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
23.0	99.6	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
22.8	99.6	E-ATMX-35-raw-cel-1574334800
22.3	99.6	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.2	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.3	99.5	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.4	99.4	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.2	99.3	GSM154506	Arabidopsis hydrated pollen grains rep2	GSE6696	Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
10.8	99.2	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
10.1	99.2	GSM311275	Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
9.9	99.1	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.1	99.1	GSM106833	opr3_JA_0.5 hr_Rep1	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.1	99.1	GSM128662	Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.1	99.1	GSM311276	Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2	GSE12402	Expression data from Arabidopsis seed compartments at the pre-globular stage
8.8	99.0	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.054 1 GO:0000719 The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines.
0.054 1 GO:0009650 Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.
0.053 1 GO:0009787 Any process that modulates the frequency, rate or extent of signal transduction mediated by abscisic acid.

SF	Genes	GO ID	Process Name
0.054	1	GO:0000719	The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines.
0.054	1	GO:0009650	Any process by which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV.
0.053	1	GO:0009787	Any process that modulates the frequency, rate or extent of signal transduction mediated by abscisic acid.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At3g21000
Gene name	unknown protein
Module size	34 genes
NF	0.55
%ile	76.4

Co-expression analysis

Gene ID At3g21000 Gene name unknown protein Module size 34 genes NF 0.55 %ile 76.4

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At3g21000

Gene name unknown protein

Module size 34 genes

NF 0.55

%ile 76.4

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays