Co-expression analysis

Gene ID At3g20950
Gene name CYP705A32
Module size 37 genes
NF 0.24
%ile 25.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g20950821645CYP705A32member of CYP705AO.I.H.G.S.X.
0.4152.40.78At3g43760823487transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4152.40.84At5g28940833020transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.77At5g34450833359transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3643.60.82At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.80At2g250303768249-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3439.80.77At5g37050833675-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.3338.10.77At2g22520816785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFO.I.H.G.S.X.
0.3338.10.77At5g10880830955tRNA synthetase-related / tRNA ligase-relatedF:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation;C:cytoplasm;BOMFAPO.I.H.G.S.X.
0.3338.10.78At2g07300815300transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.70.78At5g53740835455unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.3133.80.79At4g03160828054-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.3133.80.81At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.10.77At5g44270834450-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.3032.10.78At2g140303767829transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.80At5g14900831342helicase associated (HA2) domain-containing proteinF:helicase activity;P:biological_process unknown;C:cellular_component unknown;MBFOPO.I.H.G.S.X.
0.2930.30.78At1g44085841011glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFO.I.H.G.S.X.
0.2930.30.77At3g45990823742actin-depolymerizing factor, putativeF:actin binding;P:biological_process unknown;C:intracellular;MPOFO.I.H.G.S.X.
0.2930.30.79At4g38070829963bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAVO.I.H.G.S.X.
0.2624.40.80At5g28130832887transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2624.40.77At5g351503771255transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.81At2g107403767791transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2522.60.77At4g19320827673transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.50.80At3g440003769616transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2014.40.79At1g437153767310transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1912.70.77At2g29250817474lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.1912.70.77At4g076003770530transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.40.77At4g35170829670-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.1710.20.77At2g153803768619transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1710.20.78At5g26640832725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.168.80.78At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVO.I.H.G.S.X.
0.146.80.78At5g49140834973disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOAFO.I.H.G.S.X.
0.124.90.77At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.114.10.78At3g304003769078transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.114.10.78At4g095403770072transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.103.40.77At1g335803766899transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.051.10.78At3g06280819802-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.699.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
65.599.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
62.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
59.999.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
59.099.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
58.599.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
57.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.099.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
55.899.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
54.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
53.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.699.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
51.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
48.699.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
48.199.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.099.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.499.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.399.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.199.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.399.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.699.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.499.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
35.299.7E-MEXP-1443-raw-cel-1581869515
31.999.7GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
30.299.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.499.6GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
21.599.6E-MEXP-432-raw-cel-590864447
14.899.4GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
14.799.4E-MEXP-432-raw-cel-590864460
14.199.4GSM134301Penfield_1-3_endosperm-control_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
13.799.4GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.899.3GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
12.399.3GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
12.299.3GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.499.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.299.2GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
11.099.2GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
10.299.2GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.099.2GSM106909opr3-JA_2 hrs_Rep1GSE4733Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profilingLink to GEO
9.899.1GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.299.1GSM134299Penfield_1-1_endosperm-control_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in ArabidopsisLink to GEO
9.299.1E-ATMX-35-raw-cel-1574334832
8.799.0GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0511GO:0006433The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO
0.0351GO:0006306The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.Link to AmiGO
0.0121GO:0045087Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.020100270Cysteine and methionine metabolismLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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