Co-expression analysis

Gene ID At3g17150
Gene name enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor
Module size 66 genes
NF 0.88
%ile 98.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g17150820972enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
1.00100.00.98At2g06090815164self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
1.00100.00.99At4g30070829130LCR59 (Low-molecular-weight cysteine-rich 59)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.H.G.S.X.
0.9897.80.99At2g44540819062AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.H.G.S.X.
0.9897.80.95At2g30090817560GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MPBAOO.I.H.G.S.X.
0.9897.80.98At5g39280833924ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.9897.80.95At2g37720818349unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.9797.60.94At1g64830842791aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.9797.60.95At4g10210826612unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.9797.60.95At4g23080828407unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.9797.60.96At4g32105829342galactosyltransferaseF:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;PO.I.H.G.S.X.
0.9697.30.96At5g54220835510-Encodes a defensin-like (DEFL) family protein.O.I.H.G.S.X.
0.9697.30.93At1g13680837929phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.S.X.
0.9597.00.92At5g56480835749protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.H.G.S.X.
0.9396.40.94At1g78710844207unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.9396.40.89At5g19270832047unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.9396.40.94At2g02515814781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9296.00.83At1g22015838806DD46F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOFO.I.H.G.S.X.
0.9296.00.91At2g32360817797ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MOFPVBAO.I.H.G.S.X.
0.9296.00.92At5g06500830538AGL96 (AGAMOUS-LIKE 96)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.9296.00.93At5g46950834741invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9195.60.92At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.H.G.S.X.
0.9195.60.89At4g33830829525catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPFO.I.H.G.S.X.
0.9195.60.90At5g61470836268zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFVAO.I.H.G.S.X.
0.9095.10.95At5g39260833922ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.9095.10.78At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFO.I.H.G.S.X.
0.9095.10.90At4g23350828434unknown proteinF:unknown;P:unknown;C:endomembrane system;PFBO.I.H.G.S.X.
0.9095.10.82At1g22210838826trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFAO.I.H.G.S.X.
0.8994.60.82At5g58840836001subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.H.G.S.X.
0.8994.60.93At1g56620842117pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8994.60.93At3g57270824894BG1 (BETA-1,3-GLUCANASE 1)encodes a member of glycosyl hydrolase family 17O.I.H.G.S.X.
0.8994.60.92At4g29285829050LCR24 (Low-molecular-weight cysteine-rich 24)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.H.G.S.X.
0.8994.60.89At3g24510822044-Encodes a defensin-like (DEFL) family protein.O.I.H.G.S.X.
0.8894.00.80At2g32770817838purple acid phosphatase (PAP13)F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PMOFBAO.I.H.G.S.X.
0.8894.00.87At5g46810834725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO.I.H.G.S.X.
0.8894.00.89At5g59110836029subtilisin-like serine protease-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.H.G.S.X.
0.8894.00.93At1g10190837557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.8793.50.89At5g14860831338transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.H.G.S.X.
0.8793.50.90At2g30810817632gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.H.G.S.X.
0.8793.50.82At3g46840823837subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.H.G.S.X.
0.8693.10.88At3g17140820971invertase inhibitor-relatedF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8693.10.87At4g20800827828FAD-binding domain-containing proteinF:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.H.G.S.X.
0.8693.10.81At4g30380829161EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBOO.I.H.G.S.X.
0.8592.40.81At1g29600839837zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.8592.40.86At3g05460819711sporozoite surface protein-relatedF:unknown;P:unknown;C:endomembrane system;MOBPO.I.H.G.S.X.
0.8592.40.73At4g28700828988AMT1F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPAO.I.H.G.S.X.
0.8592.40.75At2g35890818162CPK25member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.8592.40.83At1g17800838358plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8592.40.83At5g25410832613unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.H.G.S.X.
0.8491.90.79At1g21850838787sks8 (SKU5 Similar 8)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.8491.90.86At5g35900833576LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8491.90.86At1g09370837459enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.8391.40.78At2g12940815775UNE4 (unfertilized embryo sac 4)F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:nucleus, chloroplast;MPFOO.I.H.G.S.X.
0.8391.40.78At4g32080829339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8391.40.85At5g15000831352-Encodes a ECA1 gametogenesis related family proteinO.I.H.G.S.X.
0.8290.90.78At3g16970820953self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8190.40.82At4g39650830119GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.O.I.H.G.S.X.
0.8190.40.76At5g38330833815LCR80 (Low-molecular-weight cysteine-rich 80)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.H.G.S.X.
0.8190.40.77At5g39440833940SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.7888.60.77At3g14850820714unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.7888.60.78At5g59190836037subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:response to cadmium ion, proteolysis;C:cellular_component unknown;BPOFAMO.I.H.G.S.X.
0.7586.90.76At3g17230820983invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7385.50.74At3g04100819565AGL57F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.H.G.S.X.
0.7284.80.72At2g40210818613AGL48 (AGAMOUS-LIKE 48)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.H.G.S.X.
0.7184.20.75At1g64940842802CYP89A6member of CYP89AO.I.H.G.S.X.
0.6882.20.71At2g19500816469CKX2 (CYTOKININ OXIDASE 2)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
85.099.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
51.199.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
49.899.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.499.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
46.299.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.199.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.099.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
44.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.999.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.299.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.799.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.699.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.099.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.099.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.599.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.599.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.299.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
33.399.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.699.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
29.599.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
22.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
21.699.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
17.899.5GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
14.199.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.199.2GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibitionLink to GEO
10.699.2GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.499.2GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.299.2GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
9.599.1GSM184533Protoplasted root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.499.1GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.499.1GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0432GO:0009831The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0402GO:0009828The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.0392GO:0006486The addition of a sugar unit to a protein amino acid, e.g. the addition of glycan chains to proteins.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.023100908Zeatin biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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