Co-expression analysis

Gene ID At3g16910
Gene name AAE7 (ACYL-ACTIVATING ENZYME 7)
Module size 15 genes
NF 0.07
%ile 4.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g16910820946AAE7 (ACYL-ACTIVATING ENZYME 7)Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.O.I.H.G.S.X.
0.1811.40.82At4g29220829043PFK1 (PHOSPHOFRUCTOKINASE 1)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex, plasma membrane;BOMPFAVO.I.H.G.S.X.
0.1710.20.83At2g46080819216-F:unknown;P:biological_process unknown;C:unknown;PBMO.I.H.G.S.X.
0.135.80.82At4g03260828003leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.114.10.83At4g01280827903myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:unknown;POMO.I.H.G.S.X.
0.114.10.83At2g01680814697ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:plasma membrane;MOFBPVAO.I.H.G.S.X.
0.114.10.82At3g27090822327-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBO.I.H.G.S.X.
0.103.40.82At5g20360832158octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.H.G.S.X.
0.082.30.83At5g23920832457unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;PO.I.H.G.S.X.
0.071.90.83At2g18960816413AHA1 (ARABIDOPSIS H+ ATPASE 1)Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.O.I.H.G.S.X.
0.051.10.83At2g39940818581COI1 (CORONATINE INSENSITIVE 1)Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.O.I.H.G.S.X.
0.051.10.82At2g32950817857COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.O.I.H.G.S.X.
0.030.60.83At3g56840824851FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPVO.I.H.G.S.X.
0.020.40.83At5g42740834283glucose-6-phosphate isomerase, cytosolic (PGIC)F:glucose-6-phosphate isomerase activity;P:response to cadmium ion, gluconeogenesis, glycolysis;C:cellular_component unknown;BOPMFAO.I.H.G.S.X.
0.020.40.82At5g53170835398FTSH11 (FtsH protease 11)encodes an FtsH protease that is localized to the chloroplast and the mitochondrionO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
210.1100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
158.599.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
138.299.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
87.399.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.199.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
32.699.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.599.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
30.199.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.599.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.999.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.999.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.899.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.799.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.599.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.399.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.599.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.099.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.999.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.899.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.799.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.599.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.299.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.399.6GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
21.699.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.399.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.299.6GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in ArabidopsisLink to GEO
20.399.6GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in ArabidopsisLink to GEO
18.399.5GSM305284estradiol induced, biological replicate 2GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thalianaLink to GEO
17.599.5GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
17.599.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.099.5GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
16.699.5GSM284387Arabidopsis GSUS4bGSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
15.799.5E-MEXP-1797-raw-cel-1669767985
15.199.4GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
13.499.4GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
13.499.4GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
13.299.4E-MEXP-1443-raw-cel-1581869863
12.999.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.999.3GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
12.799.3GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
12.699.3GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
11.999.3GSM134206Murray_3-3_D5-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cellsLink to GEO
11.999.3E-MEXP-1797-raw-cel-1669768012
11.499.3E-MEXP-1797-raw-cel-1669768066
11.099.2GSM305282estradiol induced, biological replicate 1GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thalianaLink to GEO
10.799.2E-ATMX-31-raw-cel-1516947916
10.699.2GSM67081Arabidopsis_Ovary04GSE3056Arabidopsis Pollination StudyLink to GEO
10.599.2E-MEXP-1797-raw-cel-1669767994
10.099.2GSM67084Arabidopsis_Stigma01GSE3056Arabidopsis Pollination StudyLink to GEO
10.099.2E-MEXP-1797-raw-cel-1669768048
9.799.1GSM67080Arabidopsis_Ovary03GSE3056Arabidopsis Pollination StudyLink to GEO
9.699.1E-MEXP-1797-raw-cel-1669768075
9.699.1GSM67079Arabidopsis_Ovary02GSE3056Arabidopsis Pollination StudyLink to GEO
9.399.1E-ATMX-1-raw-cel-1112746154
9.299.1E-MEXP-1797-raw-cel-1669767976
9.099.1E-MEXP-807-raw-cel-1173273144

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1181GO:0006083The chemical reactions and pathways involving acetate, the anion of acetic acid.Link to AmiGO
0.1181GO:0006097A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.Link to AmiGO
0.1051GO:0009647The control of plant growth, development, and differentiation in response to growth in darkness.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.061200030Pentose phosphate pathwayLink to KEGG PATHWAY
0.042100052Galactose metabolismLink to KEGG PATHWAY
0.040200010Glycolysis / GluconeogenesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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