Co-expression analysis

Gene ID At3g14310
Gene name ATPME3
Module size 93 genes
NF 0.25
%ile 27.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g14310820651ATPME3encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism.O.I.H.G.S.X.
0.4761.20.88At3g13410820541unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.4659.80.86At4g13430826975IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAPO.I.H.G.S.X.
0.4659.80.88At1g79870844326oxidoreductase family proteinF:in 6 functions;P:metabolic process;C:unknown;BOFMPAVO.I.H.G.S.X.
0.4355.30.88At1g78900844228VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.O.I.H.G.S.X.
0.4152.40.88At3g58730825042vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)F:ATPase activity, coupled to transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;BMAOFPO.I.H.G.S.X.
0.4152.40.87At5g04590830336SIRA.thaliana gene encoding sulfite reductase.O.I.H.G.S.X.
0.4050.80.87At2g30860817636ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.3948.40.85At4g21960828285PRXR1Encodes AT4g21960 (AT4g21960/T8O5_170).O.I.H.G.S.X.
0.3846.70.88At3g42050823170vacuolar ATP synthase subunit H family proteinF:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOPO.I.H.G.S.X.
0.3846.70.87At4g14880827145OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA.O.I.H.G.S.X.
0.3846.70.87At3g24160822002PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)Encodes a putative Type 1 membrane protein (PMP).O.I.H.G.S.X.
0.3846.70.88At5g60920836213COB (COBRA)Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.O.I.H.G.S.X.
0.3745.00.88At3g20390821584endoribonuclease L-PSP family proteinF:endoribonuclease activity;P:response to cadmium ion;C:thylakoid, mitochondrion, chloroplast, plastid, vacuole;BOFMAPO.I.H.G.S.X.
0.3643.60.87At2g17265816232HSK (HOMOSERINE KINASE)Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts.O.I.H.G.S.X.
0.3643.60.88At5g43940834417HOT5 (sensitive to hot temperatures 5)Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.O.I.H.G.S.X.
0.3643.60.87At3g10920820263MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)manganese superoxide dismutase (MSD1)O.I.H.G.S.X.
0.3541.60.86At1g48420841263D-CDES (D-CYSTEINE DESULFHYDRASE)Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity.O.I.H.G.S.X.
0.3541.60.86At3g19490821483ATNHD1member of Na+/H+ antiporter-Putative familyO.I.H.G.S.X.
0.3541.60.85At3g52500824415aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, membrane, plant-type cell wall;PMFOO.I.H.G.S.X.
0.3541.60.86At1g10200837558WLIM1F:transcription factor activity, zinc ion binding;P:biological_process unknown;C:plasma membrane;MPOFO.I.H.G.S.X.
0.3439.80.85At1g20260838614hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanismF:hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:plasma membrane, chloroplast, vacuole;BPOMAFO.I.H.G.S.X.
0.3439.80.85At1g12840837840DET3 (DE-ETIOLATED 3)Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.O.I.H.G.S.X.
0.3439.80.87At3g18060821331transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.H.G.S.X.
0.3439.80.86At5g40810834081cytochrome c1, putativeF:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:mitochondrial respiratory chain, mitochondrion, vacuole, mitochondrial respiratory chain complex III, membrane;OBMFPO.I.H.G.S.X.
0.3235.70.87At1g50480841470THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)10-formyltetrahydrofolate synthetase (THFS) mRNA, completeO.I.H.G.S.X.
0.3235.70.85At3g01910820118SOX (SULFITE OXIDASE)Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.O.I.H.G.S.X.
0.3235.70.86At1g05850837095POM1 (POM-POM1)Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.O.I.H.G.S.X.
0.3032.10.85At3g01120821292MTO1 (METHIONINE OVERACCUMULATION 1)encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.O.I.H.G.S.X.
0.3032.10.86At3g12290820409tetrahydrofolate dehydrogenase/cyclohydrolase, putativeF:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPAO.I.H.G.S.X.
0.3032.10.85At5g41210834123ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.2930.30.85At4g02500827940XT2 (UDP-XYLOSYLTRANSFERASE 2)Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.O.I.H.G.S.X.
0.2930.30.86At5g63980836519SAL1Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.O.I.H.G.S.X.
0.2930.30.86At2g41530818751SFGH (S-FORMYLGLUTATHIONE HYDROLASE)Encodes a protein with S-formylglutathione hydrolase activity.O.I.H.G.S.X.
0.2930.30.86At1g58080842175ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1)ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesisO.I.H.G.S.X.
0.2930.30.85At2g16510816150vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)F:ATPase activity;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MOFBPAO.I.H.G.S.X.
0.2930.30.87At5g05170830399CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.O.I.H.G.S.X.
0.2930.30.87At5g18520831970-F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFBO.I.H.G.S.X.
0.2830.30.87At1g16560838226Per1-like family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOO.I.H.G.S.X.
0.2830.30.86At1g30910839975molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BMFOPAO.I.H.G.S.X.
0.2830.30.86At3g06050819778PRXIIF (PEROXIREDOXIN IIF)Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.O.I.H.G.S.X.
0.2830.30.86At5g07370830628IPK2a (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA)Encodes inositol polyphosphate kinase, which phosphorylates inositol 1,4,5-triphosphate and inositol 1,3,4,5-tetrakisphosphate to generate inositol 1,3,4,5,6-pentakisphosphateO.I.H.G.S.X.
0.2830.30.85At3g55440824710TPI (TRIOSEPHOSPHATE ISOMERASE)Encodes triosephosphate isomerase.O.I.H.G.S.X.
0.2830.30.86At5g26880832746tRNA/rRNA methyltransferase (SpoU) family proteinF:RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOPMO.I.H.G.S.X.
0.2830.30.87At5g10560830921glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAMO.I.H.G.S.X.
0.2726.20.87At2g24200816954cytosol aminopeptidaseF:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:response to cadmium ion, proteolysis;C:vacuole;OBMPFAO.I.H.G.S.X.
0.2726.20.85At5g47030834749ATP synthase delta' chain, mitochondrialEncodes the mitochondrial ATP synthase subunit delta.O.I.H.G.S.X.
0.2726.20.85At4g23100828409GSH1 (GLUTAMATE-CYSTEINE LIGASE)Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis. Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective.O.I.H.G.S.X.
0.2726.20.86At4g32530829388vacuolar ATP synthase, putative / V-ATPase, putativeF:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBAO.I.H.G.S.X.
0.2726.20.85At1g65960842908GAD2 (GLUTAMATE DECARBOXYLASE 2)glutamate decarboxylase (GAD2)O.I.H.G.S.X.
0.2726.20.86At2g47390819352serine-type endopeptidase/ serine-type peptidaseF:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast stroma, chloroplast;BOMAPFO.I.H.G.S.X.
0.2624.40.86At5g08530830752CI51 (51 kDa subunit of complex I)F:4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH;P:mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;OBMFPAO.I.H.G.S.X.
0.2624.40.85At3g61540825327peptidase family proteinF:peptidase activity, aminopeptidase activity;P:proteolysis;C:vacuole;BOFPMO.I.H.G.S.X.
0.2522.60.86At5g54540835542-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.2522.60.85At2g32810817842BGAL9 (Beta galactosidase 9)putative beta-galactosidaseO.I.H.G.S.X.
0.2522.60.86At4g38510830008vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:plasma membrane, vacuole, membrane, chloroplast envelope;BOPMAFO.I.H.G.S.X.
0.2420.70.85At5g66200836752ARO2 (ARMADILLO REPEAT ONLY 2)Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules.O.I.H.G.S.X.
0.2420.70.87At2g30980817649ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.O.I.H.G.S.X.
0.2420.70.85At4g38920830047ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)F:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MOFBPAO.I.H.G.S.X.
0.2420.70.86At1g04410839527malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:response to cadmium ion, response to salt stress;C:in 7 components;BOMPFAO.I.H.G.S.X.
0.2420.70.86At1g07140837225SIRANBPEncodes a putative Ran-binding protein (siRanBP).O.I.H.G.S.X.
0.2319.30.85At1g50170841439ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesisO.I.H.G.S.X.
0.2319.30.86At2g16600816161ROC3Encodes cytosolic cyclophilin ROC3.O.I.H.G.S.X.
0.2319.30.85At1g80600844399WIN1 (HOPW1-1-INTERACTING 1)Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).O.I.H.G.S.X.
0.2217.50.86At4g32410829376CESA1 (CELLULOSE SYNTHASE 1)Encodes a cellulose synthase isomer. CESA1 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA1, along with CESA3 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. lasma membrane complex for cellulose biosynthesis.O.I.H.G.S.X.
0.2217.50.85At5g49980835062AFB5 (Auxin F-Box protein 5)F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOFO.I.H.G.S.X.
0.2217.50.86At2g42070818807ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23)F:hydrolase activity, FAD diphosphatase activity;P:unknown;C:chloroplast;BOMAPFO.I.H.G.S.X.
0.2115.80.85At2g30870817637GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10)early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases. Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002)O.I.H.G.S.X.
0.2115.80.86At5g63890836509ATHDH (HISTIDINOL DEHYDROGENASE)Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.O.I.H.G.S.X.
0.2115.80.85At3g62580825432-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPBO.I.H.G.S.X.
0.2115.80.85At3g12260820406complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:mitochondrion, respiratory chain complex I, membrane;MFPOO.I.H.G.S.X.
0.2014.40.86At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.2014.40.85At4g39080830063VHA-A3 (VACUOLAR PROTON ATPASE A3)Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast.O.I.H.G.S.X.
0.2014.40.85At3g25540822140LAG1LAG1 homolog 1O.I.H.G.S.X.
0.2014.40.85At2g25800817122-F:unknown;P:biological_process unknown;C:unknown;POMFBO.I.H.G.S.X.
0.2014.40.85At5g11810831054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2014.40.86At1g78620844198integral membrane family proteinF:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;OBAMPFO.I.H.G.S.X.
0.2014.40.86At4g33480829485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPFO.I.H.G.S.X.
0.1912.70.85At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVO.I.H.G.S.X.
0.1912.70.85At4g16143827302IMPA-2 (IMPORTIN ALPHA ISOFORM 2)Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.O.I.H.G.S.X.
0.1811.40.85At1g14670838029endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOFO.I.H.G.S.X.
0.1811.40.85At4g33670829509L-galactose dehydrogenase (L-GalDH)Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesisO.I.H.G.S.X.
0.1710.20.85At1g20770838667unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO.I.H.G.S.X.
0.1710.20.86At4g31040829231proton extrusion protein-relatedF:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOFO.I.H.G.S.X.
0.1710.20.85At5g09810830841ACT7 (ACTIN 7)Member of Actin gene family.Mutants are defective in germination and root growth.O.I.H.G.S.X.
0.168.80.87At1g27450839636APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.O.I.H.G.S.X.
0.157.80.85At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPO.I.H.G.S.X.
0.157.80.85At2g13560815842malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFAO.I.H.G.S.X.
0.135.80.85At3g09250820081DNA binding / nucleaseF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;BPOO.I.H.G.S.X.
0.135.80.85At3g07140819900GPI transamidase component Gpi16 subunit family proteinF:GPI-anchor transamidase activity;P:biological_process unknown;C:endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.124.90.85At5g63570836476GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.O.I.H.G.S.X.
0.114.10.85At3g59870825157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.092.80.85At1g03475839489LIN2 (LESION INITIATION 2)Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.O.I.H.G.S.X.

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Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.899.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.499.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.399.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.299.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.799.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.699.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.099.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.099.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.899.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
28.699.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.699.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.899.7GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
27.899.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.299.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.299.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.899.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
26.599.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.399.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.099.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.699.6GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
24.399.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.199.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.299.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
16.299.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.199.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
13.299.4GSM133757Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
12.299.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.499.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
10.699.2E-ATMX-35-raw-cel-1574334816
10.499.2GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
9.699.1GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.499.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.399.1GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.299.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
9.299.1GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.099.1GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.999.0GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
8.899.0GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
8.799.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.699.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1188GO:0015986The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.Link to AmiGO
0.0533GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO
0.0433GO:0009407The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.0851000190Oxidative phosphorylationLink to KEGG PATHWAY
0.054300920Sulfur metabolismLink to KEGG PATHWAY
0.048300630Glyoxylate and dicarboxylate metabolismLink to KEGG PATHWAY
0.0442901100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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