Co-expression analysis

Gene ID At3g12370
Gene name ribosomal protein L10 family protein
Module size 62 genes
NF 0.62
%ile 83.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7888.61.00At3g12370820415ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPO.I.H.G.S.X.
0.7385.50.93At3g6287082546260S ribosomal protein L7A (RPL7aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAPO.I.H.G.S.X.
0.7184.20.92At5g2390083245560S ribosomal protein L13 (RPL13D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MFOPO.I.H.G.S.X.
0.7184.20.93At1g73230843657nascent polypeptide-associated complex (NAC) domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.7184.20.93At2g3616081818840S ribosomal protein S14 (RPS14A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane;BOPMAFO.I.H.G.S.X.
0.7083.50.92At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34O.I.H.G.S.X.
0.6982.90.92At3g0256082130840S ribosomal protein S7 (RPS7B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;MPOFO.I.H.G.S.X.
0.6982.90.93At2g0125081465260S ribosomal protein L7 (RPL7B)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAPO.I.H.G.S.X.
0.6882.20.92At3g0920082007660S acidic ribosomal protein P0 (RPP0B)F:structural constituent of ribosome;P:translational elongation, response to salt stress, response to cold, translation;C:in 7 components;MOAFPBO.I.H.G.S.X.
0.6882.20.93At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPO.I.H.G.S.X.
0.6781.60.93At3g0711081989760S ribosomal protein L13A (RPL13aA)F:structural constituent of ribosome;P:translation;C:in 6 components;BOMAPFO.I.H.G.S.X.
0.6781.60.92At1g6743084306360S ribosomal protein L17 (RPL17B)F:structural constituent of ribosome;P:translation;C:in 6 components;MOBAFPO.I.H.G.S.X.
0.6781.60.92At2g4184081878440S ribosomal protein S2 (RPS2C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAVO.I.H.G.S.X.
0.6781.60.92At5g2785083284860S ribosomal protein L18 (RPL18C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane;MOFPAO.I.H.G.S.X.
0.6680.10.92At1g7405084374460S ribosomal protein L6 (RPL6C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPAO.I.H.G.S.X.
0.6680.10.92At2g37270818304ATRPS5B (RIBOSOMAL PROTEIN 5B)One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.O.I.H.G.S.X.
0.6680.10.93At4g2574082867940S ribosomal protein S10 (RPS10A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, membrane;OMBFPVO.I.H.G.S.X.
0.6680.10.92At3g0484081964440S ribosomal protein S3A (RPS3aA)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast;MOAPFBO.I.H.G.S.X.
0.6680.10.93At4g31700829298RPS6 (RIBOSOMAL PROTEIN S6)Encodes a putative ribosomal protein S6 (rps6).O.I.H.G.S.X.
0.6680.10.93At5g55190835612RAN3 (RAN GTPASE 3)A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.O.I.H.G.S.X.
0.6579.60.92At4g1739082745160S ribosomal protein L15 (RPL15B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, membrane;MAOPFO.I.H.G.S.X.
0.6579.60.93At1g0448083951160S ribosomal protein L23 (RPL23A)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMAFO.I.H.G.S.X.
0.6579.60.92At1g0836083735660S ribosomal protein L10A (RPL10aA)F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;BOMPAFO.I.H.G.S.X.
0.6579.60.93At1g3403084030040S ribosomal protein S18 (RPS18B)F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:in 6 components;BOPMAFO.I.H.G.S.X.
0.6579.60.92At3g0556081972260S ribosomal protein L22-2 (RPL22B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOPO.I.H.G.S.X.
0.6579.60.92At5g6067083618860S ribosomal protein L12 (RPL12C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MABOFPO.I.H.G.S.X.
0.6579.60.93At3g46040823747RPS15AD (ribosomal protein S15A D)Regulated by TCP20.O.I.H.G.S.X.
0.6579.60.93At5g6117083623840S ribosomal protein S19 (RPS19C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, vacuole;MOAPFBO.I.H.G.S.X.
0.6478.90.92At5g4793083484440S ribosomal protein S27 (RPS27D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MOPFAO.I.H.G.S.X.
0.6478.90.92At1g72370843569P40acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.O.I.H.G.S.X.
0.6478.90.92At2g3448081801160S ribosomal protein L18A (RPL18aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFPO.I.H.G.S.X.
0.6478.90.93At4g00100828167ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf developmentO.I.H.G.S.X.
0.6378.10.93At5g1613083147040S ribosomal protein S7 (RPS7C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane;MPOFO.I.H.G.S.X.
0.6378.10.92At3g49010824062ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).O.I.H.G.S.X.
0.6378.10.92At1g4883084130540S ribosomal protein S7 (RPS7A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast;MPOFO.I.H.G.S.X.
0.6277.30.92At5g4152083415440S ribosomal protein S10 (RPS10B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFVO.I.H.G.S.X.
0.6277.30.92At5g1520083137240S ribosomal protein S9 (RPS9B)F:structural constituent of ribosome;P:translation;C:in 7 components;POMBFAO.I.H.G.S.X.
0.6176.70.93At3g4503082363840S ribosomal protein S20 (RPS20A)F:structural constituent of ribosome, RNA binding;P:translation;C:cytosolic small ribosomal subunit, small ribosomal subunit;BOMAPFO.I.H.G.S.X.
0.6176.70.92At2g0439081497840S ribosomal protein S17 (RPS17A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane;MOAFPO.I.H.G.S.X.
0.6176.70.92At4g1810082753560S ribosomal protein L32 (RPL32A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;MAOPFO.I.H.G.S.X.
0.6176.70.92At4g09800826569RPS18C (S18 RIBOSOMAL PROTEIN)encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complexO.I.H.G.S.X.
0.6075.70.92At5g5985083610740S ribosomal protein S15A (RPS15aF)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cell wall, membrane;BOMAPFO.I.H.G.S.X.
0.6075.70.92At2g36170818189ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)F:protein binding, structural constituent of ribosome;P:protein modification process, translation;C:cytosolic large ribosomal subunit, nucleolus;MPOFVBO.I.H.G.S.X.
0.6075.70.92At4g2709082881760S ribosomal protein L14 (RPL14B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 8 components;MOFPAO.I.H.G.S.X.
0.6075.70.92At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBO.I.H.G.S.X.
0.5974.70.92At1g2740083963060S ribosomal protein L17 (RPL17A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane, chloroplast, vacuole;MOBAFPO.I.H.G.S.X.
0.5974.70.92At3g2339082192060S ribosomal protein L36a/L44 (RPL36aA)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPBO.I.H.G.S.X.
0.5974.70.92At5g19510832071elongation factor 1B alpha-subunit 2 (eEF1Balpha2)F:translation elongation factor activity;P:translational elongation, defense response to bacterium;C:apoplast, eukaryotic translation elongation factor 1 complex;MOPFBO.I.H.G.S.X.
0.5974.70.93At2g27530817299PGY1 (PIGGYBACK1)Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.5974.70.92At2g39460818531RPL23AA (RIBOSOMAL PROTEIN L23AA)Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.O.I.H.G.S.X.
0.5873.80.92At5g3553083351840S ribosomal protein S3 (RPS3C)F:structural constituent of ribosome;P:response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMAPFO.I.H.G.S.X.
0.5873.80.93At1g26750839216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.80.93At2g34520818015RPS14 (mitochondrial ribosomal protein S14)nuclear-encoded mitochondrial ribosomal protein S14O.I.H.G.S.X.
0.5673.00.92At3g5343082451160S ribosomal protein L12 (RPL12B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MBAOFPO.I.H.G.S.X.
0.5570.60.92At4g12600826873ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinF:RNA binding;P:ribosome biogenesis;C:ribonucleoprotein complex;MOAFPO.I.H.G.S.X.
0.5469.50.93At5g35620833534LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.O.I.H.G.S.X.
0.5267.40.94At2g39990818587EIF2translation initiation factor eIF2 p47 subunit homologO.I.H.G.S.X.
0.5166.30.92At1g29250839799nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:plasma membrane, nucleus;POO.I.H.G.S.X.
0.5065.30.93At3g01280820914VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.S.X.
0.4659.80.92At3g51010824265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;PO.I.H.G.S.X.
0.4558.30.93At5g05000830382TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.O.I.H.G.S.X.
0.4355.30.93At3g03600821211RPS2 (RIBOSOMAL PROTEIN S2)Structural component of the mitochondrial ribosome small subunitO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.999.7GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
34.699.7GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
32.199.7GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
31.399.7GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
30.399.7GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
30.199.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.099.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.999.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.899.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.899.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.399.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.299.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.999.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.299.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.299.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.899.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.799.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.599.6GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
24.499.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
24.399.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.599.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
22.399.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.199.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.399.6GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.199.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.099.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
20.799.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.199.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
18.999.5GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
17.999.5GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
17.599.5GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
15.699.5GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
14.899.4E-ATMX-33-raw-cel-1562596241
14.399.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
13.299.4GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
11.499.3GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.399.1E-ATMX-33-raw-cel-1562596197
9.199.1GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)Link to GEO
9.099.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
8.799.0GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.14112GO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.Link to AmiGO
0.0321GO:0019750The directed movement of a chloroplast, a chlorophyll-containing plastid found in cells of algae and higher plants, into, out of, within or between cells.Link to AmiGO
0.0321GO:0048569Development, taking place during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.2523703010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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