CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At3g09940

Gene name MDHAR (MONODEHYDROASCORBATE REDUCTASE)

Module size 5 genes

NF 0.07

%ile 3.9

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.40 50.8 1.00 At3g09940 820155 MDHAR (MONODEHYDROASCORBATE REDUCTASE) Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica. O.I. H.G. S.X.
0.40 50.8 0.88 At4g21830 828271 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV O.I. H.G. S.X.
0.12 4.9 0.65 At1g16370 838207 OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA O.I. H.G. S.X.
0.06 1.4 0.63 At3g11340 820307 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. H.G. S.X.
0.04 0.9 0.64 At3g52450 824410 PUB22 (PLANT U-BOX 22) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. O.I. H.G. S.X.

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Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 99.3 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.6 99.3 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.9 99.2 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.8 99.2 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.6 99.2 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6 99.2 E-MEXP-807-raw-cel-1173273170
10.4 99.2 GSM133973 Birnbaum_1-3_src5-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
9.9 99.1 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.8 99.1 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.3 99.1 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.2 99.1 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 E-ATMX-1-raw-cel-1112746095
8.8 99.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.7 99.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.7 99.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.6 99.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6 99.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6 99.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.286 1 GO:0043903 Any process that modulates the frequency, rate or extent of symbiosis, an interaction between two organisms living together in more or less intimate association.
0.222 1 GO:0002679 A phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
0.222 1 GO:0051865 The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.054 1 00053 Ascorbate and aldarate metabolism
0.002 1 01100 Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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