Co-expression analysis

Gene ID At3g07990
Gene name SCPL27 (serine carboxypeptidase-like 27)
Module size 10 genes
NF 0.10
%ile 6.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g07990819990SCPL27 (serine carboxypeptidase-like 27)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.3948.40.87At5g50420835110unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3032.10.85At1g75680843902AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plasma membrane;PBMOFO.I.H.G.S.X.
0.2014.40.85At5g14790831331bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.1710.20.85At1g48230841243phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.124.90.86At3g08550820002KOB1 (KOBITO)mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane ProteinO.I.H.G.S.X.
0.103.40.85At1g64650842773-F:unknown;P:unknown;C:plasma membrane;BPMOFAO.I.H.G.S.X.
0.071.90.85At4g39990830160RABA4B (RAB GTPASE HOMOLOG A4B)GTP-binding protein ATGB3O.I.H.G.S.X.
0.061.40.85At2g47320819345peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;BOMFPAO.I.H.G.S.X.
0.040.90.85At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
70.999.9E-MEXP-807-raw-cel-1173273144
62.199.8E-MEXP-807-raw-cel-1173273252
36.599.7E-MEXP-807-raw-cel-1173273116
30.599.7E-MEXP-807-raw-cel-1173273170
29.799.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.499.7E-MEXP-807-raw-cel-1173273060
28.899.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.199.7GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
27.999.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.399.6GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
24.799.6GSM184917Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
24.099.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.499.6GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
23.199.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.099.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.699.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.599.6GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.399.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.299.6GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
20.799.6GSM266673Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
20.399.6E-MEXP-807-raw-cel-1173273088
19.599.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.499.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.799.5GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.199.5GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.099.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.999.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.599.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
17.599.5E-MEXP-98-raw-cel-320188969
16.399.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
15.999.5E-MEXP-807-raw-cel-1173273223
15.199.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.399.4GSM133720Deeken_A-2-Deeke-Inf_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
14.299.4E-MEXP-98-raw-cel-320188914
13.899.4GSM133971Birnbaum_1-1_src5-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
12.999.3GSM131452AtGen_6-9312_Heatstress-Shoots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
12.599.3GSM266674Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
12.399.3GSM131451AtGen_6-9311_Heatstress-Shoots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
11.899.3E-MEXP-807-raw-cel-1173273196
11.899.3GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.699.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.699.3GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.499.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.499.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.399.3GSM184898Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
11.299.2GSM266672Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatmentLink to GEO
11.099.2GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
10.999.2E-MEXP-1725-raw-cel-1669614623
10.999.2E-MEXP-1725-raw-cel-1669614582
10.799.2GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
10.799.2E-MEXP-1725-raw-cel-1669614634
10.599.2E-MEXP-1725-raw-cel-1669614562
10.099.2GSM131453AtGen_6-9321_Heatstress-Roots-3.0h_Rep1GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
9.999.1E-MEXP-807-raw-cel-1173272948
9.099.1GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.099.1GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
9.099.1GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)Link to GEO
8.999.0GSM131454AtGen_6-9322_Heatstress-Roots-3.0h_Rep2GSE5628AtGenExpress: Stress Treatments (Heat stress)Link to GEO
8.799.0GSM133993Birnbaum_1-26_J0571-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0671GO:0009749A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.Link to AmiGO
0.0611GO:0032313Any process that modulates the activity of a GTPase of the Rab family.Link to AmiGO
0.0561GO:0009831The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.061100460Cyanoamino acid metabolismLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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