Co-expression analysis

Gene ID At3g07110
Gene name 60S ribosomal protein L13A (RPL13aA)
Module size 67 genes
NF 0.77
%ile 93.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.8894.01.00At3g0711081989760S ribosomal protein L13A (RPL13aA)F:structural constituent of ribosome;P:translation;C:in 6 components;BOMAPFO.I.H.G.S.X.
0.9195.60.97At2g3448081801160S ribosomal protein L18A (RPL18aB)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFPO.I.H.G.S.X.
0.8994.60.97At5g1613083147040S ribosomal protein S7 (RPS7C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane;MPOFO.I.H.G.S.X.
0.8793.50.97At5g2785083284860S ribosomal protein L18 (RPL18C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane;MOFPAO.I.H.G.S.X.
0.8693.10.97At3g0256082130840S ribosomal protein S7 (RPS7B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;MPOFO.I.H.G.S.X.
0.8693.10.96At1g22780838884PFL (POINTED FIRST LEAVES)S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.O.I.H.G.S.X.
0.8693.10.97At3g6287082546260S ribosomal protein L7A (RPL7aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAPO.I.H.G.S.X.
0.8693.10.97At1g23290838938RPL27ABEncodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20.O.I.H.G.S.X.
0.8592.40.97At4g1739082745160S ribosomal protein L15 (RPL15B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, membrane;MAOPFO.I.H.G.S.X.
0.8592.40.96At1g73230843657nascent polypeptide-associated complex (NAC) domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.8592.40.97At2g3616081818840S ribosomal protein S14 (RPS14A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast, membrane;BOPMAFO.I.H.G.S.X.
0.8592.40.98At3g0484081964440S ribosomal protein S3A (RPS3aA)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast;MOAPFBO.I.H.G.S.X.
0.8491.90.97At4g00100828167ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf developmentO.I.H.G.S.X.
0.8391.40.97At2g0125081465260S ribosomal protein L7 (RPL7B)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAPO.I.H.G.S.X.
0.8391.40.96At3g0208082112040S ribosomal protein S19 (RPS19A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFBO.I.H.G.S.X.
0.8290.90.95At5g6067083618860S ribosomal protein L12 (RPL12C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MABOFPO.I.H.G.S.X.
0.8290.90.96At2g27530817299PGY1 (PIGGYBACK1)Encodes ribosomal protein L10aP. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.8190.40.96At3g4503082363840S ribosomal protein S20 (RPS20A)F:structural constituent of ribosome, RNA binding;P:translation;C:cytosolic small ribosomal subunit, small ribosomal subunit;BOMAPFO.I.H.G.S.X.
0.8190.40.95At1g04270839564RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15)Encodes cytosolic ribosomal protein S15.O.I.H.G.S.X.
0.8190.40.96At2g3719081829560S ribosomal protein L12 (RPL12A)F:structural constituent of ribosome;P:response to cold, ribosome biogenesis;C:in 7 components;MBAOFPO.I.H.G.S.X.
0.8089.80.95At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34O.I.H.G.S.X.
0.8089.80.97At5g1520083137240S ribosomal protein S9 (RPS9B)F:structural constituent of ribosome;P:translation;C:in 7 components;POMBFAO.I.H.G.S.X.
0.7989.10.95At4g3467082961940S ribosomal protein S3A (RPS3aB)F:structural constituent of ribosome;P:translation;C:in 6 components;MOAPFBO.I.H.G.S.X.
0.7989.10.95At5g2390083245560S ribosomal protein L13 (RPL13D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MFOPO.I.H.G.S.X.
0.7989.10.95At1g02780839407emb2386 (embryo defective 2386)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFPO.I.H.G.S.X.
0.7989.10.96At1g6743084306360S ribosomal protein L17 (RPL17B)F:structural constituent of ribosome;P:translation;C:in 6 components;MOBAFPO.I.H.G.S.X.
0.7989.10.96At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPO.I.H.G.S.X.
0.7989.10.96At5g4152083415440S ribosomal protein S10 (RPS10B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFVO.I.H.G.S.X.
0.7989.10.98At5g6117083623840S ribosomal protein S19 (RPS19C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, vacuole;MOAPFBO.I.H.G.S.X.
0.7989.10.96At5g4770083482160S acidic ribosomal protein P1 (RPP1C)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOABO.I.H.G.S.X.
0.7888.60.96At2g39460818531RPL23AA (RIBOSOMAL PROTEIN L23AA)Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.O.I.H.G.S.X.
0.7888.60.96At1g3403084030040S ribosomal protein S18 (RPS18B)F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:in 6 components;BOPMAFO.I.H.G.S.X.
0.7788.00.97At1g2688083833160S ribosomal protein L34 (RPL34A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, nucleolus, chloroplast;MOPFAO.I.H.G.S.X.
0.7788.00.96At2g2771081731760S acidic ribosomal protein P2 (RPP2B)F:structural constituent of ribosome;P:translational elongation, response to cold;C:in 8 components;MFPOABO.I.H.G.S.X.
0.7788.00.95At1g0110083941060S acidic ribosomal protein P1 (RPP1A)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAO.I.H.G.S.X.
0.7788.00.95At5g19510832071elongation factor 1B alpha-subunit 2 (eEF1Balpha2)F:translation elongation factor activity;P:translational elongation, defense response to bacterium;C:apoplast, eukaryotic translation elongation factor 1 complex;MOPFBO.I.H.G.S.X.
0.7687.40.97At3g5343082451160S ribosomal protein L12 (RPL12B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, membrane;MBAOFPO.I.H.G.S.X.
0.7687.40.96At1g2740083963060S ribosomal protein L17 (RPL17A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane, chloroplast, vacuole;MOBAFPO.I.H.G.S.X.
0.7687.40.96At4g1500082715960S ribosomal protein L27 (RPL27C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, intracellular;MOFPO.I.H.G.S.X.
0.7586.90.96At5g0709083060040S ribosomal protein S4 (RPS4B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MOAFPO.I.H.G.S.X.
0.7586.90.95At2g0999081545640S ribosomal protein S16 (RPS16A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast, membrane;BOMAFPO.I.H.G.S.X.
0.7586.90.95At3g0968082012540S ribosomal protein S23 (RPS23A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus;BOPMFAO.I.H.G.S.X.
0.7586.90.95At5g4793083484440S ribosomal protein S27 (RPS27D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MOPFAO.I.H.G.S.X.
0.7586.90.96At2g3337081790060S ribosomal protein L23 (RPL23B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus;BOPMAFO.I.H.G.S.X.
0.7586.90.96At5g5985083610740S ribosomal protein S15A (RPS15aF)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cell wall, membrane;BOMAPFO.I.H.G.S.X.
0.7486.10.97At3g0920082007660S acidic ribosomal protein P0 (RPP0B)F:structural constituent of ribosome;P:translational elongation, response to salt stress, response to cold, translation;C:in 7 components;MOAFPBO.I.H.G.S.X.
0.7486.10.95At3g46040823747RPS15AD (ribosomal protein S15A D)Regulated by TCP20.O.I.H.G.S.X.
0.7486.10.95At3g48930824054EMB1080 (embryo defective 1080)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFPO.I.H.G.S.X.
0.7486.10.95At2g4184081878440S ribosomal protein S2 (RPS2C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAVO.I.H.G.S.X.
0.7486.10.96At3g2339082192060S ribosomal protein L36a/L44 (RPL36aA)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPBO.I.H.G.S.X.
0.7385.50.96At3g1151082032440S ribosomal protein S14 (RPS14B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus;BOPMAFO.I.H.G.S.X.
0.7385.50.96At1g1854083843560S ribosomal protein L6 (RPL6A)F:structural constituent of ribosome;P:translation;C:in 8 components;MOFPAO.I.H.G.S.X.
0.7385.50.95At2g37270818304ATRPS5B (RIBOSOMAL PROTEIN 5B)One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.O.I.H.G.S.X.
0.7385.50.95At1g0836083735660S ribosomal protein L10A (RPL10aA)F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;BOMPAFO.I.H.G.S.X.
0.7284.80.96At4g31700829298RPS6 (RIBOSOMAL PROTEIN S6)Encodes a putative ribosomal protein S6 (rps6).O.I.H.G.S.X.
0.7184.20.95At1g1593083816340S ribosomal protein S12 (RPS12A)F:structural constituent of ribosome;P:response to cadmium ion, response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome;MAOFPO.I.H.G.S.X.
0.7184.20.96At2g0439081497840S ribosomal protein S17 (RPS17A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, plasma membrane;MOAFPO.I.H.G.S.X.
0.7184.20.96At2g4761081937460S ribosomal protein L7A (RPL7aA)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, nucleolus, plasma membrane, chloroplast;MOFAPO.I.H.G.S.X.
0.7184.20.97At3g0556081972260S ribosomal protein L22-2 (RPL22B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOPO.I.H.G.S.X.
0.7184.20.96At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBO.I.H.G.S.X.
0.7083.50.96At3g49010824062ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).O.I.H.G.S.X.
0.7083.50.95At2g4412081901860S ribosomal protein L7 (RPL7C)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 7 components;MOAFPO.I.H.G.S.X.
0.7083.50.95At4g1810082753560S ribosomal protein L32 (RPL32A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus;MAOPFO.I.H.G.S.X.
0.7083.50.95At5g2777083283960S ribosomal protein L22 (RPL22C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane, membrane;MFOPO.I.H.G.S.X.
0.6781.60.96At3g25520822138ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.O.I.H.G.S.X.
0.6680.10.96At1g18080838388ATARCAEncodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.O.I.H.G.S.X.
0.6378.10.95At4g18730827607RPL16Bencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root and shoot apical meristems and in lateral root primordia. Expression in lateral root primordia is induced by auxin.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
90.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
51.099.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.099.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.499.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
38.299.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.399.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
36.499.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
36.199.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.799.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
34.799.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
33.499.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.999.7GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.999.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.899.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.899.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
29.599.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.199.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.199.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.999.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.299.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.199.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.099.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.199.6GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.499.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
14.699.4GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.099.4E-ATMX-33-raw-cel-1562596241
12.299.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.399.3GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
11.099.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.199.1GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seedsLink to GEO
9.199.1GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
9.199.1E-ATMX-33-raw-cel-1562596197
8.999.0GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.14913GO:0042254The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.Link to AmiGO
0.0562GO:0009955The regionalization process by which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.Link to AmiGO
0.0352GO:0009965The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.3214803010RibosomeLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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