Co-expression analysis

Gene ID At3g05100
Gene name -
Module size 19 genes
NF 0.32
%ile 40.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At3g05100819672-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOFAO.I.H.G.S.X.
0.4050.80.92At5g40810834081cytochrome c1, putativeF:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:mitochondrial respiratory chain, mitochondrion, vacuole, mitochondrial respiratory chain complex III, membrane;OBMFPO.I.H.G.S.X.
0.3948.40.92At1g04690839450KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)F:oxidoreductase activity, potassium channel activity;P:oxidation reduction, potassium ion transport;C:plasma membrane, membrane;BOFMPAO.I.H.G.S.X.
0.3948.40.93At3g08550820002KOB1 (KOBITO)mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane ProteinO.I.H.G.S.X.
0.3745.00.92At1g70490843385ARFA1DA member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.3338.10.93At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.3338.10.91At3g42050823170vacuolar ATP synthase subunit H family proteinF:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOPO.I.H.G.S.X.
0.3338.10.91At3g59110825080protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.3133.80.92At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsO.I.H.G.S.X.
0.2930.30.92At1g25490839135RCN1 (ROOTS CURL IN NPA)One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stemO.I.H.G.S.X.
0.2830.30.91At3g13410820541unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.2830.30.91At3g24160822002PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)Encodes a putative Type 1 membrane protein (PMP).O.I.H.G.S.X.
0.2726.20.91At1g43190840918polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MPOFO.I.H.G.S.X.
0.2522.60.91At2g25310817069carbohydrate bindingF:carbohydrate binding;P:biological_process unknown;C:endomembrane system;MFPOBO.I.H.G.S.X.
0.2217.50.91At3g19980821536ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.O.I.H.G.S.X.
0.1912.70.91At3g07300819918eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.H.G.S.X.
0.1811.40.91At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVO.I.H.G.S.X.
0.168.80.91At2g23940816926unknown proteinF:unknown;P:unknown;C:plasma membrane;MFOPO.I.H.G.S.X.
0.157.80.91At4g02580828130NADH-ubiquinone oxidoreductase 24 kDa subunit, putativeF:electron carrier activity, NAD or NADH binding, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;BOMFPAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
102.299.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
56.799.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.499.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.399.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
45.499.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.299.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.799.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
37.399.7E-MEXP-807-raw-cel-1173273088
34.699.7GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.899.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.699.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.199.7E-MEXP-807-raw-cel-1173273223
31.799.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.199.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
31.099.7E-MEXP-807-raw-cel-1173273196
30.499.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.199.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.299.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.199.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.999.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
28.899.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.799.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.599.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
23.899.6E-MEXP-807-raw-cel-1173273060
22.599.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.599.6E-MEXP-807-raw-cel-1173273116
19.599.6E-MEXP-807-raw-cel-1173273170
18.999.5GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
18.299.5E-MEXP-1138-raw-cel-1432772682
18.199.5GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
17.799.5GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
17.399.5GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
17.199.5GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
16.099.5E-MEXP-1138-raw-cel-1432773354
15.799.5E-MEXP-1138-raw-cel-1432773226
15.699.5E-MEXP-1138-raw-cel-1432773162
15.599.5GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
15.099.4E-MEXP-1138-raw-cel-1432773194
14.899.4GSM242953Mock day 1 (day1E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
14.799.4GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
14.499.4E-MEXP-1138-raw-cel-1432772618
13.999.4E-ATMX-35-raw-cel-1574334880
13.799.4E-MEXP-1138-raw-cel-1432772554
13.599.4E-MEXP-1138-raw-cel-1432772586
13.399.4E-MEXP-807-raw-cel-1173273144
12.999.3E-MEXP-1138-raw-cel-1432772650
12.999.3E-MEXP-807-raw-cel-1173273252
12.999.3E-MEXP-1138-raw-cel-1432772938
12.599.3GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.499.3GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
11.699.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.499.3E-ATMX-35-raw-cel-1574334864
11.399.3GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.399.3E-MEXP-1138-raw-cel-1432772970
11.199.2E-MEXP-1138-raw-cel-1432773322
11.099.2GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
11.099.2E-MEXP-1138-raw-cel-1432772522
10.799.2E-MEXP-285-raw-cel-440782791
10.699.2GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.599.2E-MEXP-285-raw-cel-440782725
10.499.2GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.299.2GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
10.099.2E-MEXP-1138-raw-cel-1432772778
10.099.2E-MEXP-1138-raw-cel-1432773386
9.899.1GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
9.899.1E-MEXP-1138-raw-cel-1432772906
9.799.1E-MEXP-1138-raw-cel-1432773290
9.499.1E-MEXP-1138-raw-cel-1432772714
9.499.1GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
9.499.1E-ATMX-35-raw-cel-1574334832
9.399.1E-MEXP-1138-raw-cel-1432773002
9.299.1E-MEXP-1138-raw-cel-1432773034
9.299.1GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.999.0E-MEXP-1138-raw-cel-1432772874
8.899.0E-MEXP-1138-raw-cel-1432773258
8.799.0GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
8.699.0E-MEXP-1138-raw-cel-1432773098

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0911GO:0042325Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.Link to AmiGO
0.0801GO:0006890The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.Link to AmiGO
0.0741GO:0006120The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.037300190Oxidative phosphorylationLink to KEGG PATHWAY
0.005301100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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