CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g47020

Gene name peptide chain release factor, putative

Module size 25 genes

NF 0.16

%ile 12.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At2g47020 819316 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:mitochondrion, cytoplasm;OBMFPV O.I. H.G. S.X.
0.37 45.0 0.88 At3g56640 824831 exocyst complex subunit Sec15-like family protein F:unknown;P:pollen germination, pollen tube growth;C:exocyst;MFPOA O.I. H.G. S.X.
0.28 30.3 0.88 At1g31814 840070 FRL2 (FRIGIDA LIKE 2) family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885 O.I. H.G. S.X.
0.27 26.2 0.87 At5g15270 831379 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.26 24.4 0.88 At5g65180 836642 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV O.I. H.G. S.X.
0.26 24.4 0.89 At5g05660 830450 ATNFXL2 Encodes a homolog of the mammalian zinc finger transcription factor NF-X1. O.I. H.G. S.X.
0.24 20.7 0.87 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. H.G. S.X.
0.23 19.3 0.88 At4g24500 828552 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV O.I. H.G. S.X.
0.20 14.4 0.88 At1g79540 844292 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. H.G. S.X.
0.20 14.4 0.88 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.19 12.7 0.88 At2g22530 816786 catalytic/ transferase F:transferase activity, catalytic activity;P:metabolic process, phospholipid biosynthetic process;C:endomembrane system;MFOBPA O.I. H.G. S.X.
0.18 11.4 0.88 At2g21070 816642 FIO1 (FIONA1) This gene is predicted to an encode a nuclear-localized protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering. O.I. H.G. S.X.
0.16 8.8 0.88 At1g28090 839702 polynucleotide adenylyltransferase family protein F:RNA binding, nucleotidyltransferase activity;P:RNA processing;C:cellular_component unknown;BOFMPVA O.I. H.G. S.X.
0.14 6.8 0.88 At3g62620 825436 sucrose-phosphatase-related F:unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. H.G. S.X.
0.13 5.8 0.87 At3g02710 821269 nuclear associated protein-related / NAP-related Encodes a protein with a putative role in mRNA splicing. O.I. H.G. S.X.
0.13 5.8 0.88 At4g15570 827233 MAA3 (MAGATAMA 3) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development. O.I. H.G. S.X.
0.12 4.9 0.88 At3g43700 823478 ATBPM6 (BTB-POZ and MATH domain 6) F:protein binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.11 4.1 0.89 At4g34840 829636 ATMTN2 F:methylthioadenosine nucleosidase activity;P:nucleoside metabolic process;C:cellular_component unknown;BPO O.I. H.G. S.X.
0.11 4.1 0.87 At5g20680 832191 unknown protein F:unknown;P:biological_process unknown;C:unknown;POMFVB O.I. H.G. S.X.
0.11 4.1 0.88 At5g22030 832263 UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MOFPVB O.I. H.G. S.X.
0.09 2.8 0.88 At3g06340 819808 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.09 2.8 0.88 At1g74800 843819 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFB O.I. H.G. S.X.
0.08 2.3 0.88 At3g06940 3768779 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.08 2.3 0.87 At4g32160 829348 phox (PX) domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAV O.I. H.G. S.X.
0.07 1.9 0.88 At3g45100 823646 SETH2 encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At2g47020	819316	peptide chain release factor, putative	F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:mitochondrion, cytoplasm;OBMFPV	O.I.	H.G.	S.X.
0.37	45.0	0.88	At3g56640	824831	exocyst complex subunit Sec15-like family protein	F:unknown;P:pollen germination, pollen tube growth;C:exocyst;MFPOA	O.I.	H.G.	S.X.
0.28	30.3	0.88	At1g31814	840070	FRL2 (FRIGIDA LIKE 2)	family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885	O.I.	H.G.	S.X.
0.27	26.2	0.87	At5g15270	831379	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	H.G.	S.X.
0.26	24.4	0.88	At5g65180	836642	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV	O.I.	H.G.	S.X.
0.26	24.4	0.89	At5g05660	830450	ATNFXL2	Encodes a homolog of the mammalian zinc finger transcription factor NF-X1.	O.I.	H.G.	S.X.
0.24	20.7	0.87	At4g14920	827150	DNA binding / protein binding / zinc ion binding	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	H.G.	S.X.
0.23	19.3	0.88	At4g24500	828552	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV	O.I.	H.G.	S.X.
0.20	14.4	0.88	At1g79540	844292	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	H.G.	S.X.
0.20	14.4	0.88	At3g23900	821973	RNA recognition motif (RRM)-containing protein	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.19	12.7	0.88	At2g22530	816786	catalytic/ transferase	F:transferase activity, catalytic activity;P:metabolic process, phospholipid biosynthetic process;C:endomembrane system;MFOBPA	O.I.	H.G.	S.X.
0.18	11.4	0.88	At2g21070	816642	FIO1 (FIONA1)	This gene is predicted to an encode a nuclear-localized protein that is involved in regulating the period of circadian rhythms without affecting their amplitude or robustness. FIONA1 seems to act as a central oscillator-associated component, but its transcript levels are not regulated in a circadian or light-dependent manner. FIONA1 also appears to be involved in photoperiod-dependent flowering.	O.I.	H.G.	S.X.
0.16	8.8	0.88	At1g28090	839702	polynucleotide adenylyltransferase family protein	F:RNA binding, nucleotidyltransferase activity;P:RNA processing;C:cellular_component unknown;BOFMPVA	O.I.	H.G.	S.X.
0.14	6.8	0.88	At3g62620	825436	sucrose-phosphatase-related	F:unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	H.G.	S.X.
0.13	5.8	0.87	At3g02710	821269	nuclear associated protein-related / NAP-related	Encodes a protein with a putative role in mRNA splicing.	O.I.	H.G.	S.X.
0.13	5.8	0.88	At4g15570	827233	MAA3 (MAGATAMA 3)	Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.	O.I.	H.G.	S.X.
0.12	4.9	0.88	At3g43700	823478	ATBPM6 (BTB-POZ and MATH domain 6)	F:protein binding;P:unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.11	4.1	0.89	At4g34840	829636	ATMTN2	F:methylthioadenosine nucleosidase activity;P:nucleoside metabolic process;C:cellular_component unknown;BPO	O.I.	H.G.	S.X.
0.11	4.1	0.87	At5g20680	832191	unknown protein	F:unknown;P:biological_process unknown;C:unknown;POMFVB	O.I.	H.G.	S.X.
0.11	4.1	0.88	At5g22030	832263	UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8)	F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MOFPVB	O.I.	H.G.	S.X.
0.09	2.8	0.88	At3g06340	819808	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.09	2.8	0.88	At1g74800	843819	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOFB	O.I.	H.G.	S.X.
0.08	2.3	0.88	At3g06940	3768779	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.08	2.3	0.87	At4g32160	829348	phox (PX) domain-containing protein	F:phosphoinositide binding;P:signal transduction;C:unknown;MOBFPAV	O.I.	H.G.	S.X.
0.07	1.9	0.88	At3g45100	823646	SETH2	encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
60.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.4 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.0 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.0 99.8 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
53.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.1 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.1 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.9 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.8 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
47.3 99.8 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
47.1 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.3 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.4 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.9 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.4 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.3 99.7 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
33.0 99.7 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.8 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.1 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.4 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.5 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.9 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.6 99.6 GSM142737 DH001_ATH1_A4-UNM2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
22.3 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.9 99.6 GSM142734 DH001_ATH1_A1-UNM1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
19.7 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.3 99.6 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
18.2 99.5 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.6 99.5 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.3 99.5 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
15.2 99.4 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
14.1 99.4 GSM258002 LMPC-derived phloem_1 GSE10247 Transcriptome analysis of the Arabidopsis phloem
13.9 99.4 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
11.5 99.3 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.1 99.2 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
10.8 99.2 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
10.1 99.2 GSM189112 HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1 GSE7796 Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
9.7 99.1 GSM258003 LMPC-derived phloem_2 GSE10247 Transcriptome analysis of the Arabidopsis phloem
8.7 99.0 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
8.6 99.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
60.9	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.4	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
57.0	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.8	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.0	99.8	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
53.0	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.1	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.1	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
50.7	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.9	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.2	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.8	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
47.3	99.8	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
47.1	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
44.3	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.2	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
40.4	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.5	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.9	99.7	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.4	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.3	99.7	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
33.0	99.7	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.8	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
31.1	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.4	99.7	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
26.5	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.9	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.6	99.6	GSM142737	DH001_ATH1_A4-UNM2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
22.3	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.9	99.6	GSM142734	DH001_ATH1_A1-UNM1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
19.7	99.6	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
19.3	99.6	GSM142738	DH001_ATH1_A5-BCP2	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
18.2	99.5	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.6	99.5	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.3	99.5	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
15.2	99.4	GSM67086	Arabidopsis_Stigma02	GSE3056	Arabidopsis Pollination Study
14.1	99.4	GSM258002	LMPC-derived phloem_1	GSE10247	Transcriptome analysis of the Arabidopsis phloem
13.9	99.4	GSM142735	DH001_ATH1_A2-BCP1	GSE6162	Transcriptome analysis of Arabidopsis microgametogenesis
11.5	99.3	GSM184497	Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.1	99.2	GSM67087	Arabidopsis_Stigma03	GSE3056	Arabidopsis Pollination Study
10.8	99.2	GSM134301	Penfield_1-3_endosperm-control_Rep3_ATH1	GSE5751	The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
10.1	99.2	GSM189112	HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1	GSE7796	Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 Levels
9.7	99.1	GSM258003	LMPC-derived phloem_2	GSE10247	Transcriptome analysis of the Arabidopsis phloem
8.7	99.0	GSM270853	Arabidopsis cell culture, 4 h_control_rep2	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
8.6	99.0	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.069 1 GO:0009875 The interaction between a pollen grain and pistil.
0.067 1 GO:0009648 A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
0.067 1 GO:0010183 The process by which the growth of pollen tube is directed towards the female gametophyte.

SF	Genes	GO ID	Process Name
0.069	1	GO:0009875	The interaction between a pollen grain and pistil.
0.067	1	GO:0009648	A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
0.067	1	GO:0010183	The process by which the growth of pollen tube is directed towards the female gametophyte.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.057 1 00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
0.023 1 00270 Cysteine and methionine metabolism
0.003 2 01100 Metabolic pathways

SF	Genes	KEGG ID	Pathway name
0.057	1	00563	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
0.023	1	00270	Cysteine and methionine metabolism
0.003	2	01100	Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g47020
Gene name	peptide chain release factor, putative
Module size	25 genes
NF	0.16
%ile	12.7

Co-expression analysis

Gene ID At2g47020 Gene name peptide chain release factor, putative Module size 25 genes NF 0.16 %ile 12.7

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

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Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.057100563Glycosylphosphatidylinositol(GPI)-anchor biosynthesis0.023100270Cysteine and methionine metabolism0.003201100Metabolic pathways

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g47020

Gene name peptide chain release factor, putative

Module size 25 genes

NF 0.16

%ile 12.7

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.057 1 00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
0.023 1 00270 Cysteine and methionine metabolism
0.003 2 01100 Metabolic pathways

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays