Co-expression analysis

Gene ID At2g46020
Gene name transcription regulatory protein SNF2, putative
Module size 5 genes
NF 0.44
%ile 62.8



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.5773.81.00At2g46020819210transcription regulatory protein SNF2, putativeEncodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.O.I.H.G.S.X.
0.7586.90.93At3g23900821973RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.4355.30.93At1g24706839081unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.3643.60.93At3g17450821009hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFBO.I.H.G.S.X.
0.2522.60.93At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
278.3100.0GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
250.1100.0GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
229.7100.0GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
150.199.9GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
115.599.9GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
109.799.9E-ATMX-35-raw-cel-1574334832
107.599.9E-ATMX-35-raw-cel-1574334816
68.299.9GSM258002LMPC-derived phloem_1GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
51.999.8E-ATMX-35-raw-cel-1574334800
49.099.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
44.699.8GSM258003LMPC-derived phloem_2GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
32.899.7GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination StudyLink to GEO
29.799.7GSM258004LMPC-derived phloem_3GSE10247Transcriptome analysis of the Arabidopsis phloemLink to GEO
29.399.7GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination StudyLink to GEO
27.699.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.099.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.399.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.799.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
25.799.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.699.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
20.499.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.699.6GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
19.299.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.099.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.899.5E-ATMX-30-raw-cel-1513696906
18.299.5GSM131603ATGE_41_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
17.299.5GSM131605ATGE_41_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
17.199.5GSM131604ATGE_41_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
16.699.5GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
15.999.5GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.699.4GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.499.4GSM142832GM001_ATH1_A9-Torres-3N6_repeat2GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
14.399.4GSM152143siz1-3 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
13.999.4GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.899.4GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.799.4GSM268249dor-drought-2, biological rep 2GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.Link to GEO
13.399.4GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
12.999.3GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.999.3GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
12.699.3GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.999.3E-MEXP-682-raw-cel-922397577
11.799.3GSM152145siz1-3 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
11.699.3GSM152141siz1-3 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
11.699.3E-MEXP-682-raw-cel-922397560
11.099.2GSM142845MG001_ATH1_A26-Torres-8N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
10.799.2GSM152137Col-0 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stressLink to GEO
10.499.2GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.299.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
9.699.1GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
9.599.1GSM131658ATGE_28_A2GSE5633AtGenExpress: Developmental series (shoots and stems)Link to GEO
9.599.1GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.199.1GSM269827C2 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
8.799.0GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
8.799.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0043044Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.Link to AmiGO
0.2221GO:0009920The cell cycle process whereby the cell plate is formed at the equator of the spindle in the dividing cells during early telophase. An example of this is found in Arabidopsis thaliana.Link to AmiGO
0.1671GO:0010199The process by which boundaries between lateral organs and the meristem is established and maintained.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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