CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g45610

Gene name hydrolase

Module size 7 genes

NF 0.48

%ile 67.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.42 53.9 1.00 At2g45610 819169 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAV O.I. H.G. S.X.
0.67 81.6 0.90 At1g43630 840947 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. H.G. S.X.
0.57 73.8 0.90 At2g10970 815562 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.50 65.3 0.92 At1g16290 838198 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast, vacuole;OBP O.I. H.G. S.X.
0.50 65.3 0.93 At3g22650 821836 CEG (CEGENDUO) F:molecular_function unknown;P:response to auxin stimulus, lateral root formation;C:cellular_component unknown;PO O.I. H.G. S.X.
0.46 59.8 0.89 At3g02440 821154 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFB O.I. H.G. S.X.
0.38 46.7 0.92 At1g16360 838205 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:unknown;P:biological_process unknown;C:membrane;MOFP O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.42	53.9	1.00	At2g45610	819169	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAV	O.I.	H.G.	S.X.
0.67	81.6	0.90	At1g43630	840947	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	H.G.	S.X.
0.57	73.8	0.90	At2g10970	815562	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.50	65.3	0.92	At1g16290	838198	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, vacuole;OBP	O.I.	H.G.	S.X.
0.50	65.3	0.93	At3g22650	821836	CEG (CEGENDUO)	F:molecular_function unknown;P:response to auxin stimulus, lateral root formation;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.46	59.8	0.89	At3g02440	821154	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFB	O.I.	H.G.	S.X.
0.38	46.7	0.92	At1g16360	838205	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	F:unknown;P:biological_process unknown;C:membrane;MOFP	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
244.6 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
173.9 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.0 99.8 E-ATMX-35-raw-cel-1574334832
29.8 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.7 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.9 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.8 99.6 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7 99.6 E-ATMX-35-raw-cel-1574334816
21.3 99.6 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
21.1 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.7 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
20.7 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5 99.6 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.4 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.9 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.6 99.5 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.5 99.5 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
18.2 99.5 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.7 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.6 99.5 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.1 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.0 99.5 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.0 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.4 99.5 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.1 99.4 E-ATMX-35-raw-cel-1574334800
13.4 99.4 E-MEXP-807-raw-cel-1173273144
13.0 99.4 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
12.6 99.3 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.3 99.3 E-MEXP-807-raw-cel-1173273060
11.7 99.3 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
11.5 99.3 E-MEXP-807-raw-cel-1173273252
11.2 99.2 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
10.9 99.2 E-MEXP-807-raw-cel-1173273223
10.7 99.2 E-MEXP-807-raw-cel-1173273088
10.6 99.2 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
9.8 99.1 E-MEXP-807-raw-cel-1173273116
9.8 99.1 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.6 99.1 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
9.4 99.1 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
9.3 99.1 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
9.0 99.1 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
8.9 99.0 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
8.8 99.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
8.8 99.0 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
8.7 99.0 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
244.6	100.0	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
173.9	100.0	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
48.0	99.8	E-ATMX-35-raw-cel-1574334832
29.8	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
22.7	99.6	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.9	99.6	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.8	99.6	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.7	99.6	E-ATMX-35-raw-cel-1574334816
21.3	99.6	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
21.1	99.6	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.7	99.6	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
20.7	99.6	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.5	99.6	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
19.4	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.9	99.5	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.6	99.5	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.5	99.5	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
18.2	99.5	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
17.7	99.5	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.6	99.5	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.4	99.5	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.1	99.5	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.0	99.5	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
16.0	99.5	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.4	99.5	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
15.1	99.4	E-ATMX-35-raw-cel-1574334800
13.4	99.4	E-MEXP-807-raw-cel-1173273144
13.0	99.4	GSM131325	AtGen_6-3521_Saltstress-Roots-12.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
12.6	99.3	GSM131589	ATGE_35_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.3	99.3	E-MEXP-807-raw-cel-1173273060
11.7	99.3	GSM131321	AtGen_6-3421_Saltstress-Roots-6.0h_Rep1	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
11.5	99.3	E-MEXP-807-raw-cel-1173273252
11.2	99.2	GSM131588	ATGE_35_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
10.9	99.2	E-MEXP-807-raw-cel-1173273223
10.7	99.2	E-MEXP-807-raw-cel-1173273088
10.6	99.2	GSM38668	NSNP	GSE2268	Arabidopsis polysome microarray
9.8	99.1	E-MEXP-807-raw-cel-1173273116
9.8	99.1	GSM131590	ATGE_35_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.6	99.1	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
9.4	99.1	GSM131322	AtGen_6-3422_Saltstress-Roots-6.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)
9.3	99.1	GSM184914	Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
9.0	99.1	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
8.9	99.0	GSM67086	Arabidopsis_Stigma02	GSE3056	Arabidopsis Pollination Study
8.8	99.0	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
8.8	99.0	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
8.7	99.0	GSM131318	AtGen_6-3322_Saltstress-Roots-3.0h_Rep2	GSE5623	AtGenExpress: Stress Treatments (Salt stress)

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0010311 The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.111	1	GO:0010311	The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g45610
Gene name	hydrolase
Module size	7 genes
NF	0.48
%ile	67.3

Co-expression analysis

Gene ID At2g45610 Gene name hydrolase Module size 7 genes NF 0.48 %ile 67.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.1111GO:0010311The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g45610

Gene name hydrolase

Module size 7 genes

NF 0.48

%ile 67.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.111 1 GO:0010311 The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays