Co-expression analysis

Gene ID At2g44760
Gene name unknown protein
Module size 27 genes
NF 0.22
%ile 21.4



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g44760819085unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.4253.90.90At1g75010843839ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)Encodes ARC3 (Accumulation and Replication of Chloroplast 3), a chloroplast division factor functioning in the initiation of chloroplast division. ARC3 is a chimera of the prokaryotic FtsZ and part of the eukaryotic phosphatidylinositol-4-phosphate 5-kinase (PIP5K). Located on the outer surface of the chloroplast in a ring-like structure at the early stage of chloroplast division. The arc3 mutant has a small number of abnormally large chloroplasts in the cell.O.I.H.G.S.X.
0.3948.40.90At4g27620828873unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OPMFBAO.I.H.G.S.X.
0.3235.70.91At5g52110835287HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BPOO.I.H.G.S.X.
0.3032.10.90At5g03420831846-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAVO.I.H.G.S.X.
0.2930.30.91At5g50280835093EMB1006 (embryo defective 1006)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAO.I.H.G.S.X.
0.2522.60.90At1g79080844249pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.H.G.S.X.
0.2420.70.90At2g20690816597lumazine-binding family proteinA synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase.O.I.H.G.S.X.
0.2420.70.90At4g31040829231proton extrusion protein-relatedF:unknown;P:biological_process unknown;C:integral to membrane, chloroplast;PBOFO.I.H.G.S.X.
0.2420.70.92At5g16620831524TIC40chloroplast protein import (Tic40)O.I.H.G.S.X.
0.2319.30.91At3g59870825157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.H.G.S.X.
0.2217.50.90At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAO.I.H.G.S.X.
0.1912.70.92At3g19810821518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.H.G.S.X.
0.1912.70.90At3g09250820081DNA binding / nucleaseF:DNA binding, nuclease activity;P:nucleotide-excision repair;C:chloroplast;BPOO.I.H.G.S.X.
0.1912.70.90At5g03430831843phosphoadenosine phosphosulfate (PAPS) reductase family proteinF:transferase activity;P:Mo-molybdopterin cofactor biosynthetic process, metabolic process;C:cellular_component unknown;BOMFAPO.I.H.G.S.X.
0.1912.70.90At2g36250818197FTSZ2-1Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.O.I.H.G.S.X.
0.1811.40.90At1g06820837193CRTISO (CAROTENOID ISOMERASE)Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.O.I.H.G.S.X.
0.1710.20.90At4g14910827149imidazoleglycerol-phosphate dehydratase, putativeF:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPMO.I.H.G.S.X.
0.1710.20.91At5g62650836386unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.168.80.90At1g63680842672MUREEncodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis.O.I.H.G.S.X.
0.157.80.90At3g13490820551OVA5 (OVULE ABORTION 5)Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.O.I.H.G.S.X.
0.146.80.90At3g10670820236ATNAP7Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged FeS clusters. Expressed in embryos and meristems.O.I.H.G.S.X.
0.146.80.90At5g67290836864FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPO.I.H.G.S.X.
0.146.80.90At1g69390843271ATMINE1 (Arabidopsis homologue of bacterial MinE 1)Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.O.I.H.G.S.X.
0.114.10.89At5g22830832346ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10)putative Mg(2+) transport proteinO.I.H.G.S.X.
0.103.40.90At1g70200843356RNA recognition motif (RRM)-containing proteinF:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVAO.I.H.G.S.X.
0.061.40.90At2g36240818196-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAVO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
167.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
42.599.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8E-ATMX-33-raw-cel-1562596241
36.199.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
35.899.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.699.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
32.199.7E-ATMX-33-raw-cel-1562596197
31.499.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.799.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.399.7E-ATMX-33-raw-cel-1562596103
30.399.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
29.299.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
27.999.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.699.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
25.499.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.299.6GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
23.699.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
22.599.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.699.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.399.6GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
21.099.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.499.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.399.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
18.899.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.099.5GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
18.099.5GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
17.399.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
16.499.5GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transitionLink to GEO
16.099.5GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.999.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.999.4GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
14.399.4GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.899.4E-MEXP-509-raw-cel-829148420
12.699.3E-MEXP-509-raw-cel-829148525
12.599.3E-MEXP-509-raw-cel-829148276
11.999.3GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
11.999.3GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.899.3GSM131329AtGen_6-3621_Saltstress-Roots-24.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)Link to GEO
11.799.3GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
11.399.3GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
11.299.2GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
10.999.2E-MEXP-509-raw-cel-829148240
10.399.2E-MEXP-509-raw-cel-829148348
10.099.2GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
8.899.0E-MEXP-509-raw-cel-829148201

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2114GO:0010020The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis.Link to AmiGO
0.0691GO:0009662A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an etioplast. An etioplast is a plastid arrested in the development of chloroplasts from proplastids due to absence of light or low light conditions.Link to AmiGO
0.0691GO:0015693The directed movement of magnesium (Mg) ions into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.057100740Riboflavin metabolismLink to KEGG PATHWAY
0.049100340Histidine metabolismLink to KEGG PATHWAY
0.041100906Carotenoid biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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