Co-expression analysis

Gene ID At2g44560
Gene name AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11)
Module size 82 genes
NF 0.64
%ile 85.0



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g44560819064AtGH9B11 (Arabidopsis thaliana glycosyl hydrolase 9B11)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.H.G.S.X.
0.9396.40.94At1g30710839951FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.H.G.S.X.
0.8592.40.93At1g51240841547-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8391.40.93At4g39180830073SEC14encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiaeO.I.H.G.S.X.
0.8190.40.92At2g26850817226F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.H.G.S.X.
0.8190.40.93At2g05850815137scpl38 (serine carboxypeptidase-like 38)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.7989.10.92At2g28180817364ATCHX8member of Putative Na+/H+ antiporter familyO.I.H.G.S.X.
0.7989.10.92At5g20390832161beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POBO.I.H.G.S.X.
0.7888.60.90At1g49490841373leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPOFVAO.I.H.G.S.X.
0.7788.00.92At3g25170822109RALFL26 (ralf-like 26)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.H.G.S.X.
0.7687.40.92At1g23350838944invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7586.90.92At3g26110822209-F:molecular_function unknown;P:unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.7486.10.91At5g46770834720unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7486.10.92At1g01980839296ATSEC1Amember of Reticuline oxidase-like familyO.I.H.G.S.X.
0.7385.50.92At5g42490834256kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVAO.I.H.G.S.X.
0.7385.50.91At4g24640828566APPB1Encodes AppB protein (AppB1).O.I.H.G.S.X.
0.7385.50.91At3g25165822108RALFL25 (ralf-like 25)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.H.G.S.X.
0.7284.80.92At3g52000824363scpl36 (serine carboxypeptidase-like 36)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.H.G.S.X.
0.7083.50.92At5g48140834866polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.7083.50.90At2g46360819243unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.7083.50.90At4g39610830115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO.I.H.G.S.X.
0.6982.90.91At1g17540838328kinaseF:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.6982.90.89At2g32460817807MYB101Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.6982.90.91At3g43120823371auxin-responsive protein-relatedF:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.H.G.S.X.
0.6882.20.91At1g54070841845dormancy/auxin associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.6882.20.89At3g13660820570disease resistance responseF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cellular_component unknown;PO.I.H.G.S.X.
0.6882.20.91At4g04980825839-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVAO.I.H.G.S.X.
0.6781.60.90At1g10620837605protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.H.G.S.X.
0.6781.60.92At1g66210842936subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOMFAO.I.H.G.S.X.
0.6781.60.90At2g47340819347invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PFOBO.I.H.G.S.X.
0.6680.10.91At3g02970821168EXL6 (EXORDIUM LIKE 6)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6680.10.89At2g21990816735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.6579.60.90At1g61860842483protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.H.G.S.X.
0.6579.60.90At3g21570821711unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6579.60.90At1g58120842179unknown proteinF:unknown;P:unknown;C:unknown;PO.I.H.G.S.X.
0.6478.90.91At1g01460839469PIPK11Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A.O.I.H.G.S.X.
0.6478.90.91At5g58170835929SVL5 (SHV3-LIKE 5)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMFO.I.H.G.S.X.
0.6478.90.90At2g33100817872ATCSLD1encodes a gene similar to cellulose synthaseO.I.H.G.S.X.
0.6478.90.91At3g17060820963pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.
0.6478.90.91At5g04180830296ACA3 (ALPHA CARBONIC ANHYDRASE 3)F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.H.G.S.X.
0.6378.10.89At5g12180831091CPK17member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.6378.10.90At1g70790843416C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.6378.10.91At1g04540839498C2 domain-containing proteinF:unknown;P:biological_process unknown;C:membrane;PMOFBO.I.H.G.S.X.
0.6277.30.90At2g41860818786CPK14member of Calcium Dependent Protein KinaseO.I.H.G.S.X.
0.6277.30.89At5g61710836293unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.6277.30.89At1g01310839333allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFOBO.I.H.G.S.X.
0.6277.30.90At5g54095835496unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMFPVAO.I.H.G.S.X.
0.6277.30.90At4g25780828683pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.H.G.S.X.
0.6176.70.90At2g13350815821C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.6176.70.90At1g61290842423SYP124 (SYNTAXIN OF PLANTS 124)member of SYP12 Gene FamilyO.I.H.G.S.X.
0.6075.70.90At2g26450817185pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.H.G.S.X.
0.6075.70.89At1g44160841019DNAJ chaperone C-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAVO.I.H.G.S.X.
0.6075.70.90At3g20190821563leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVAO.I.H.G.S.X.
0.6075.70.90At1g19500838536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6075.70.90At1g14420838004AT59F:lyase activity, pectate lyase activity;P:plant-type cell wall organization;C:endomembrane system;PBFOO.I.H.G.S.X.
0.6075.70.91At5g15140831366aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAO.I.H.G.S.X.
0.5974.70.89At3g16040820849-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.5974.70.89At2g45310819139GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4)UDP-D-glucuronate 4-epimeraseO.I.H.G.S.X.
0.5974.70.91At2g23900816922glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMAO.I.H.G.S.X.
0.5974.70.89At3g19310821465phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMO.I.H.G.S.X.
0.5873.80.89At1g68110843139epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFOO.I.H.G.S.X.
0.5873.80.90At1g11770837722FAD binding / catalytic/ electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAO.I.H.G.S.X.
0.5873.80.90At2g24450816981FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)F:molecular_function unknown;P:N-terminal protein myristoylation;C:anchored to membrane;PBMOFVAO.I.H.G.S.X.
0.5873.80.89At5g28680832975protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.
0.5773.80.89At2g18470816362protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVAO.I.H.G.S.X.
0.5773.80.89At2g43230818924serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.H.G.S.X.
0.5773.80.89At2g26410817181Iqd4 (IQ-domain 4)F:calmodulin binding;P:unknown;C:unknown;PMOBVFAO.I.H.G.S.X.
0.5773.80.89At3g17980821323C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.5773.80.89At3g20580821605COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.5773.80.90At3g26860822302-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5773.80.89At4g27580828867unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, cell wall;OBMFPVAO.I.H.G.S.X.
0.5673.00.90At1g55560842005sks14 (SKU5 Similar 14)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.H.G.S.X.
0.5673.00.89At1g25240839107epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAOO.I.H.G.S.X.
0.5673.00.89At5g23270832391STP11 (SUGAR TRANSPORTER 11)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.H.G.S.X.
0.5570.60.89At3g06260819800GATL4 (Galacturonosyltransferase-like 4)Encodes a protein with putative galacturonosyltransferase activity.O.I.H.G.S.X.
0.5570.60.89At1g47280841131unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5570.60.89At5g58050835917SVL4 (SHV3-LIKE 4)F:kinase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMFO.I.H.G.S.X.
0.5570.60.89At3g62710825445glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAMO.I.H.G.S.X.
0.5469.50.89At3g18810821414protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OMBPFVAO.I.H.G.S.X.
0.5267.40.89At3g52600824426AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAO.I.H.G.S.X.
0.5267.40.89At5g47000834746peroxidase, putativeF:xylan 1,4-beta-xylosidase activity, peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.H.G.S.X.
0.4963.50.90At4g20160827762-F:unknown;P:unknown;C:chloroplast;MOFBPVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.199.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
50.799.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
47.699.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.099.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.899.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.499.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
45.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
44.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.899.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
43.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.699.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
42.599.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.499.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.899.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
40.599.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.899.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.999.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
36.299.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
32.099.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
31.899.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
31.499.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.799.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.299.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.399.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
25.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.399.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
14.099.4GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.799.1GSM184497Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
9.599.1GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
8.699.0E-MEXP-285-raw-cel-440782725

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0422GO:0048268The process by which clathrin triskelia are assembled into the ordered structure known as a clathrin cage.Link to AmiGO
0.0412GO:0006071The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.Link to AmiGO
0.0342GO:0007267Any process that mediates the transfer of information from one cell to another.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.017100562Inositol phosphate metabolismLink to KEGG PATHWAY
0.017104070Phosphatidylinositol signaling systemLink to KEGG PATHWAY
0.016100910Nitrogen metabolismLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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