Co-expression analysis

Gene ID At2g43510
Gene name ATTI1
Module size 10 genes
NF 0.08
%ile 5.2



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.2726.21.00At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.H.G.S.X.
0.3541.60.61At3g18250821353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFOO.I.H.G.S.X.
0.3338.10.60At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.H.G.S.X.
0.2014.40.65At3g51660824329macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOBO.I.H.G.S.X.
0.2014.40.60At4g21120827860AAT1 (AMINO ACID TRANSPORTER 1)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.O.I.H.G.S.X.
0.1811.40.61At5g46350834678WRKY8member of WRKY Transcription Factor; Group II-cO.I.H.G.S.X.
0.157.80.64At1g65690842880harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.135.80.67At3g04070819562anac047 (Arabidopsis NAC domain containing protein 47)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.135.80.63At5g26340832703MSS1Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.O.I.H.G.S.X.
0.030.60.62At3g49780824140ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.699.8GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
39.599.8E-MEXP-1138-raw-cel-1432773290
38.499.8E-MEXP-1138-raw-cel-1432773258
36.199.7E-MEXP-1138-raw-cel-1432773322
34.299.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
30.999.7GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
30.399.7GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
29.999.7GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
29.399.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
29.299.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
27.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
26.899.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
26.599.7E-MEXP-1138-raw-cel-1432773354
26.499.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
25.899.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
25.199.6E-MEXP-1138-raw-cel-1432773162
25.099.6GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
24.999.6GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
24.599.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.299.6E-MEXP-1138-raw-cel-1432773034
24.299.6E-MEXP-1138-raw-cel-1432773226
23.799.6GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.699.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.599.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
23.399.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.999.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
22.499.6E-MEXP-1138-raw-cel-1432773066
22.399.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
21.799.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.299.6GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
21.199.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
21.199.6GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.499.6E-MEXP-1138-raw-cel-1432773386
19.499.6E-MEXP-1138-raw-cel-1432772682
19.399.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
19.199.6E-ATMX-35-raw-cel-1574334816
19.199.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.199.6E-MEXP-1138-raw-cel-1432773194
18.699.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
18.099.5E-ATMX-35-raw-cel-1574334880
18.099.5E-MEXP-1138-raw-cel-1432772618
17.899.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
17.299.5E-MEXP-285-raw-cel-440782725
16.899.5E-MEXP-1138-raw-cel-1432772554
16.599.5GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
16.499.5GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
16.199.5E-ATMX-35-raw-cel-1574334864
16.099.5E-ATMX-35-raw-cel-1574334832
15.999.5GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studiesLink to GEO
15.699.5GSM239254CaMV::DME stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
15.499.5GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip AnalysisLink to GEO
15.299.4E-MEXP-807-raw-cel-1173273144
15.299.4GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
15.199.4E-MEXP-546-raw-cel-863289424
15.199.4E-MEXP-1138-raw-cel-1432772586
15.099.4GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
14.899.4E-MEXP-1138-raw-cel-1432772650
14.399.4GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
13.799.4GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
13.699.4GSM270868Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
13.699.4GSM270853Arabidopsis cell culture, 4 h_control_rep2GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
13.699.4E-MEXP-807-raw-cel-1173273196
13.599.4E-MEXP-285-raw-cel-440782791
13.599.4GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesisLink to GEO
12.899.3GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
12.599.3GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
12.499.3E-MEXP-1138-raw-cel-1432772522
11.599.3E-MEXP-807-raw-cel-1173273252
11.499.3E-MEXP-1138-raw-cel-1432772906
11.499.3GSM270870Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
11.199.2GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)Link to GEO
11.099.2GSM142839MG001_ATH1_A18-Torres-6N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
10.799.2E-MEXP-546-raw-cel-863289532
10.499.2GSM142829GM001_ATH1_A11-Torres-5N3GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.999.1E-MEXP-546-raw-cel-863289476
9.999.1GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
9.899.1GSM269827C2 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
9.899.1GSM270866Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1Link to GEO
9.899.1GSM142853MG001_ATH1_A6-Torres-2N6GSE6176Impact of Type III effectors on plant defense responsesLink to GEO
9.799.1GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
9.599.1GSM131139AtGen_B-25_2-4-4_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitorsLink to GEO
9.399.1E-MEXP-807-raw-cel-1173273088
9.299.1GSM128672Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interactionLink to GEO
9.299.1E-MEXP-1138-raw-cel-1432773002
9.299.1E-MEXP-1138-raw-cel-1432772778
9.099.1E-MEXP-1138-raw-cel-1432772714
8.999.0GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in ArabidopsisLink to GEO
8.799.0E-MEXP-807-raw-cel-1173273170
8.699.0E-MEXP-1138-raw-cel-1432772842

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0043091The directed movement of L-arginine, the L-enantiomer of 2-amino-5-guanidinopentanoic acid, into a cell or organelle.Link to AmiGO
0.1671GO:0051938The directed movement of L-glutamate, the L-enantiomer of the anion of 2-aminopentanedioic acid, into a cell or organelle.Link to AmiGO
0.1541GO:0015802The directed movement of basic amino acids, amino acids with a pH above 7, into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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