Co-expression analysis

Gene ID At2g42440
Gene name -
Module size 5 genes
NF 0.76
%ile 92.6



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7385.51.00At2g42440818844-F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.8994.60.74At2g14960815985GH3.1encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.O.I.H.G.S.X.
0.7586.90.74At2g39370818522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.H.G.S.X.
0.7385.50.71At4g37295829884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.7385.50.88At5g06080830495LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)F:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.499.8GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
50.599.8GSM284389Arabidopsis GMPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
40.299.8GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
38.999.8GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
36.499.7GSM142592DB001_ATH1_A2-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
34.099.7GSM2454722 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
33.499.7GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with saltLink to GEO
30.399.7GSM2454822 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
29.399.7GSM2454922 hr Hypoxia Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
28.899.7GSM142593DB001_ATH1_A3-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
27.599.7GSM142594DB001_ATH1_A4-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
25.899.7GSM142591DB001_ATH1_A1-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
25.599.7GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
20.699.6GSM142596DB001_ATH1_A6-Brown-calGSE6148The trans-differentiation of cultured Arabidopsis cellsLink to GEO
19.099.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
18.899.5GSM2454749 hr Hypoxia Stress IP RNA Rep 1GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
17.499.5GSM133719Deeken_A-1-Deeke-Tum_SLD_REP1GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
17.299.5GSM2454849 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
15.999.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
14.899.4E-MEXP-1797-raw-cel-1669768075
14.099.4GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.799.4GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
13.699.4GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
13.299.4GSM184553Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
13.199.4E-ATMX-31-raw-cel-1516947916
12.899.3GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
12.599.3GSM218592Whole roots 3.5hr KCl control treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
12.399.3GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.899.3GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.699.3GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
11.599.3GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
11.599.3GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
11.499.3GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
11.099.2GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.899.2GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
10.799.2E-ATMX-31-raw-cel-1516947882
10.699.2GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
10.599.2GSM2454872 hr Hypoxia Stress Total RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
10.499.2GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
10.499.2E-ATMX-31-raw-cel-1516947899
10.199.2GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
10.199.2GSM2454949 hr Hypoxia Stress IP RNA Rep 3GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
10.199.2GSM2454772 hr Hypoxia Stress Total RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenationLink to GEO
10.099.2GSM133894Schroeder_1-12_JS44-starve-96h_Rep1_ATH1GSE5744Response to potassium starvation in rootsLink to GEO
9.899.1GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
9.799.1E-MEXP-1784-raw-cel-1661573074
9.599.1GSM40555Polysomal mRNA - Hypoxia stressGSE2218Changes in transcript abundance and association with large polysomes in response to hypoxia stressLink to GEO
9.599.1GSM290753root - 01% oxygen - 2h - EGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plantsLink to GEO
9.199.1GSM133721Deeken_A-1-Deeke-Tum_SLD_REP2GSE5725Agrobacterium tumefaciens-induced tumour development of Arabidopsis thalianaLink to GEO
9.199.1GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
9.099.1GSM128693Heinekamp_1-2_control-root_Rep1_ATH1GSE5522Low chronic exposure of Arabidopsis thaliana to Caesium-137Link to GEO
9.099.1GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stageLink to GEO
8.999.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
8.899.0GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO
8.899.0E-MEXP-1797-raw-cel-1669768021
8.699.0GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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