Co-expression analysis

Gene ID At2g42060
Gene name CHP-rich zinc finger protein, putative
Module size 8 genes
NF 0.59
%ile 80.9



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.7486.11.00At2g42060818806CHP-rich zinc finger protein, putativeF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO.I.H.G.S.X.
0.7788.00.83At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.H.G.S.X.
0.7184.20.79At5g43350834353PHT1Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.O.I.H.G.S.X.
0.6176.70.83At3g51350824298aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAVO.I.H.G.S.X.
0.5673.00.82At2g29995817550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5570.60.80At1g78000844135SULTR1Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.O.I.H.G.S.X.
0.5469.50.84At1g31885840079transporterF:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAVO.I.H.G.S.X.
0.4253.90.86At2g28960817445leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
81.699.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
73.099.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
72.599.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
68.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
63.599.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
62.299.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
57.899.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.999.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
54.899.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
52.899.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.099.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
50.599.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
49.799.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
49.099.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
46.499.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
46.099.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
43.499.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
42.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
38.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
33.299.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.899.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
32.699.7GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
30.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
30.199.7GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
29.799.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
28.499.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
19.299.6GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
18.299.5GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
18.199.5GSM133973Birnbaum_1-3_src5-3_Rep3_ATH1GSE5749A gene expression map of the Arabidopsis rootLink to GEO
17.399.5GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
16.799.5GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
16.399.5GSM131206AtGen_D-40_3-WL_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
15.899.5GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
15.499.5GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
15.499.5GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
15.099.4GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
14.599.4GSM131203AtGen_D-37_3-BL_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
14.399.4GSM131202AtGen_D-36_3-RL_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
14.299.4GSM131204AtGen_D-38_3-AL_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
14.199.4GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
13.599.4GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
13.099.4GSM131176AtGen_D-8_1-WL_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
12.999.3GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
12.699.3GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
12.599.3GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
11.499.3GSM131174AtGen_D-6_1-AL_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
11.299.2GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
11.099.2GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stressLink to GEO
10.599.2GSM131189AtGen_D-22_2-AL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
10.599.2GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life CycleLink to GEO
9.999.1GSM131188AtGen_D-21_2-BL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.999.1GSM131191AtGen_D-24_2-WL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.799.1GSM131200AtGen_D-34_3-FL_REP3_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.699.1GSM131187AtGen_D-20_2-RL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.599.1GSM131173AtGen_D-5_1-BL_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.599.1GSM131172AtGen_D-4_1-RL_REP1_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO
9.599.1GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
9.399.1GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutantsLink to GEO
8.899.0GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.Link to GEO
8.699.0GSM131185AtGen_D-18_2-FL_REP2_ATH1GSE5617AtGenExpress: Light treatmentsLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.Link to AmiGO
0.0951GO:0009970A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate.Link to AmiGO
0.0911GO:0006817The directed movement of phosphate into, out of, within or between cells.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

A co-expression module including the barley gene, Contig17715_at, orthologous to the query gene, At2g42060

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig17715_at-NBS-LRR disease resistance protein homologue-3e+0At3g55210anac063 (Arabidopsis NAC domain containing protein 63)O.I.H.G.S.X.
0.5066.9Contig21017_at---2e-3At5g14800P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)O.I.H.G.S.X.
0.4863.2Contig4196_s_at---2e-1At5g25010unknown proteinO.I.H.G.S.X.
0.4762.2Contig3189_at---4e+0At3g17670bindingO.I.H.G.S.X.
0.2732.1Contig24279_at---1e-1At1g22890unknown proteinO.I.H.G.S.X.
0.2122.6Contig21035_at---5e+0At3g12650unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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