CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g41940

Gene name ZFP8 (ZINC FINGER PROTEIN 8)

Module size 55 genes

NF 0.42

%ile 59.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00 100.0 1.00 At2g41940 818794 ZFP8 (ZINC FINGER PROTEIN 8) Encodes a zinc finger protein containing only a single zinc finger. O.I. H.G. S.X.
0.67 81.6 0.89 At5g35100 833461 peptidyl-prolyl cis-trans isomerase F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, peptidyl-cysteine S-nitrosylation;C:thylakoid lumen, chloroplast;MFPOBA O.I. H.G. S.X.
0.65 79.6 0.90 At2g26340 817174 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P O.I. H.G. S.X.
0.63 78.1 0.91 At3g56010 824767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P O.I. H.G. S.X.
0.58 73.8 0.90 At3g52155 824380 - F:unknown;P:unknown;C:chloroplast;OBP O.I. H.G. S.X.
0.55 70.6 0.90 At3g55250 824691 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P O.I. H.G. S.X.
0.55 70.6 0.89 At3g51510 824314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. H.G. S.X.
0.53 68.6 0.91 At2g48070 819419 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae. O.I. H.G. S.X.
0.52 67.4 0.91 At2g20725 816602 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA O.I. H.G. S.X.
0.52 67.4 0.89 At3g08010 819992 ATAB2 Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. O.I. H.G. S.X.
0.51 66.3 0.89 At3g26900 822306 shikimate kinase family protein F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF O.I. H.G. S.X.
0.51 66.3 0.89 At4g13220 826938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.50 65.3 0.91 At5g55710 835665 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP O.I. H.G. S.X.
0.50 65.3 0.89 At1g64355 842742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. H.G. S.X.
0.50 65.3 0.90 At2g04700 815013 ferredoxin thioredoxin reductase catalytic beta chain family protein F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA O.I. H.G. S.X.
0.50 65.3 0.90 At1g20810 838672 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF O.I. H.G. S.X.
0.49 63.5 0.89 At4g16410 827335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. H.G. S.X.
0.48 62.5 0.89 At4g03520 825653 ATHM2 chloroplast localized thioredoxin, similar to prokaryotic types. O.I. H.G. S.X.
0.48 62.5 0.90 At1g03680 839436 ATHM1 encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. O.I. H.G. S.X.
0.48 62.5 0.89 At2g28605 817409 - Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). O.I. H.G. S.X.
0.46 59.8 0.89 At2g35490 818114 plastid-lipid associated protein PAP, putative F:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOM O.I. H.G. S.X.
0.45 58.3 0.90 At5g16710 831532 DHAR3 (dehydroascorbate reductase 1) The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. H.G. S.X.
0.45 58.3 0.90 At4g35760 829729 - F:unknown;P:unknown;C:chloroplast;OBP O.I. H.G. S.X.
0.44 57.2 0.89 At4g14910 827149 imidazoleglycerol-phosphate dehydratase, putative F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM O.I. H.G. S.X.
0.43 55.3 0.90 At5g13720 831217 - F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPA O.I. H.G. S.X.
0.43 55.3 0.89 At2g44920 819101 thylakoid lumenal 15 kDa protein, chloroplast F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV O.I. H.G. S.X.
0.42 53.9 0.89 At2g20890 816623 PSB29 Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. O.I. H.G. S.X.
0.42 53.9 0.89 At4g14890 827146 ferredoxin family protein F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV O.I. H.G. S.X.
0.42 53.9 0.89 At3g25805 822172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO O.I. H.G. S.X.
0.42 53.9 0.89 At3g26085 822206 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:membrane;BOPA O.I. H.G. S.X.
0.42 53.9 0.89 At5g48590 834916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. H.G. S.X.
0.41 52.4 0.89 At2g35410 818107 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA O.I. H.G. S.X.
0.40 50.8 0.90 At2g28800 817429 ALB3 (ALBINO 3) member of Chloroplast membrane protein ALBINO3 family O.I. H.G. S.X.
0.40 50.8 0.89 At3g05410 819705 unknown protein F:unknown;P:unknown;C:unknown;PO O.I. H.G. S.X.
0.40 50.8 0.89 At5g03880 831679 electron carrier F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM O.I. H.G. S.X.
0.40 50.8 0.89 At5g47840 834835 AMK2 (Adenosine monophosphate kinase) F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.40 50.8 0.90 At1g32160 840108 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. H.G. S.X.
0.40 50.8 0.90 At1g30210 839901 TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24) TCP family protein involved in heterochronic regulation of leaf differentiation. O.I. H.G. S.X.
0.39 48.4 0.89 At4g28030 828918 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA O.I. H.G. S.X.
0.38 46.7 0.89 At1g54500 841892 rubredoxin family protein F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP O.I. H.G. S.X.
0.35 41.6 0.88 At3g56650 824832 thylakoid lumenal 20 kDa protein F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO O.I. H.G. S.X.
0.35 41.6 0.89 At5g42765 834286 - F:unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;P O.I. H.G. S.X.
0.35 41.6 0.89 At5g57930 835904 APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) ACCUMULATION OF PHOTOSYSTEM ONE 2 O.I. H.G. S.X.
0.34 39.8 0.89 At1g32550 840149 ferredoxin family protein F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVF O.I. H.G. S.X.
0.34 39.8 0.89 At3g27925 822416 DEGP1 (DegP protease 1) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. O.I. H.G. S.X.
0.34 39.8 0.89 At1g50320 841454 ATHX encodes a prokaryotic thioredoxin O.I. H.G. S.X.
0.33 38.1 0.89 At5g51110 835185 4-alpha-hydroxytetrahydrobiopterin dehydratase F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF O.I. H.G. S.X.
0.32 35.7 0.89 At5g66190 836751 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane. O.I. H.G. S.X.
0.31 33.8 0.89 At1g50900 841512 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO O.I. H.G. S.X.
0.30 32.1 0.89 At3g59870 825157 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP O.I. H.G. S.X.
0.30 32.1 0.89 At3g05350 819699 aminopeptidase/ hydrolase F:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAP O.I. H.G. S.X.
0.29 30.3 0.89 At4g01150 828181 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO O.I. H.G. S.X.
0.28 30.3 0.89 At1g11750 837719 CLPP6 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). O.I. H.G. S.X.
0.25 22.6 0.89 At5g13510 831195 ribosomal protein L10 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF O.I. H.G. S.X.
0.25 22.6 0.89 At3g56940 824861 CRD1 (COPPER RESPONSE DEFECT 1) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
1.00	100.0	1.00	At2g41940	818794	ZFP8 (ZINC FINGER PROTEIN 8)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	H.G.	S.X.
0.67	81.6	0.89	At5g35100	833461	peptidyl-prolyl cis-trans isomerase	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, peptidyl-cysteine S-nitrosylation;C:thylakoid lumen, chloroplast;MFPOBA	O.I.	H.G.	S.X.
0.65	79.6	0.90	At2g26340	817174	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;P	O.I.	H.G.	S.X.
0.63	78.1	0.91	At3g56010	824767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P	O.I.	H.G.	S.X.
0.58	73.8	0.90	At3g52155	824380	-	F:unknown;P:unknown;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.55	70.6	0.90	At3g55250	824691	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, nucleus;P	O.I.	H.G.	S.X.
0.55	70.6	0.89	At3g51510	824314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	H.G.	S.X.
0.53	68.6	0.91	At2g48070	819419	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.	O.I.	H.G.	S.X.
0.52	67.4	0.91	At2g20725	816602	CAAX amino terminal protease family protein	F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA	O.I.	H.G.	S.X.
0.52	67.4	0.89	At3g08010	819992	ATAB2	Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.	O.I.	H.G.	S.X.
0.51	66.3	0.89	At3g26900	822306	shikimate kinase family protein	F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF	O.I.	H.G.	S.X.
0.51	66.3	0.89	At4g13220	826938	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.50	65.3	0.91	At5g55710	835665	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBP	O.I.	H.G.	S.X.
0.50	65.3	0.89	At1g64355	842742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	H.G.	S.X.
0.50	65.3	0.90	At2g04700	815013	ferredoxin thioredoxin reductase catalytic beta chain family protein	F:ferredoxin:thioredoxin reductase activity, ferredoxin reductase activity;P:unknown;C:chloroplast;BOPA	O.I.	H.G.	S.X.
0.50	65.3	0.90	At1g20810	838672	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF	O.I.	H.G.	S.X.
0.49	63.5	0.89	At4g16410	827335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	H.G.	S.X.
0.48	62.5	0.89	At4g03520	825653	ATHM2	chloroplast localized thioredoxin, similar to prokaryotic types.	O.I.	H.G.	S.X.
0.48	62.5	0.90	At1g03680	839436	ATHM1	encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.	O.I.	H.G.	S.X.
0.48	62.5	0.89	At2g28605	817409	-	Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side).	O.I.	H.G.	S.X.
0.46	59.8	0.89	At2g35490	818114	plastid-lipid associated protein PAP, putative	F:structural molecule activity;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule;PBOM	O.I.	H.G.	S.X.
0.45	58.3	0.90	At5g16710	831532	DHAR3 (dehydroascorbate reductase 1)	The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	H.G.	S.X.
0.45	58.3	0.90	At4g35760	829729	-	F:unknown;P:unknown;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.44	57.2	0.89	At4g14910	827149	imidazoleglycerol-phosphate dehydratase, putative	F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM	O.I.	H.G.	S.X.
0.43	55.3	0.90	At5g13720	831217	-	F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BOPA	O.I.	H.G.	S.X.
0.43	55.3	0.89	At2g44920	819101	thylakoid lumenal 15 kDa protein, chloroplast	F:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPV	O.I.	H.G.	S.X.
0.42	53.9	0.89	At2g20890	816623	PSB29	Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane�delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.	O.I.	H.G.	S.X.
0.42	53.9	0.89	At4g14890	827146	ferredoxin family protein	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:chloroplast;BOPAMFV	O.I.	H.G.	S.X.
0.42	53.9	0.89	At3g25805	822172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO	O.I.	H.G.	S.X.
0.42	53.9	0.89	At3g26085	822206	CAAX amino terminal protease family protein	F:molecular_function unknown;P:proteolysis;C:membrane;BOPA	O.I.	H.G.	S.X.
0.42	53.9	0.89	At5g48590	834916	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	H.G.	S.X.
0.41	52.4	0.89	At2g35410	818107	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:thylakoid, chloroplast stroma, chloroplast;MPFOBA	O.I.	H.G.	S.X.
0.40	50.8	0.90	At2g28800	817429	ALB3 (ALBINO 3)	member of Chloroplast membrane protein ALBINO3 family	O.I.	H.G.	S.X.
0.40	50.8	0.89	At3g05410	819705	unknown protein	F:unknown;P:unknown;C:unknown;PO	O.I.	H.G.	S.X.
0.40	50.8	0.89	At5g03880	831679	electron carrier	F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM	O.I.	H.G.	S.X.
0.40	50.8	0.89	At5g47840	834835	AMK2 (Adenosine monophosphate kinase)	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA	O.I.	H.G.	S.X.
0.40	50.8	0.90	At1g32160	840108	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	H.G.	S.X.
0.40	50.8	0.90	At1g30210	839901	TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24)	TCP family protein involved in heterochronic regulation of leaf differentiation.	O.I.	H.G.	S.X.
0.39	48.4	0.89	At4g28030	828918	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOA	O.I.	H.G.	S.X.
0.38	46.7	0.89	At1g54500	841892	rubredoxin family protein	F:electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;BOAP	O.I.	H.G.	S.X.
0.35	41.6	0.88	At3g56650	824832	thylakoid lumenal 20 kDa protein	F:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBO	O.I.	H.G.	S.X.
0.35	41.6	0.89	At5g42765	834286	-	F:unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;P	O.I.	H.G.	S.X.
0.35	41.6	0.89	At5g57930	835904	APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)	ACCUMULATION OF PHOTOSYSTEM ONE 2	O.I.	H.G.	S.X.
0.34	39.8	0.89	At1g32550	840149	ferredoxin family protein	F:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVF	O.I.	H.G.	S.X.
0.34	39.8	0.89	At3g27925	822416	DEGP1 (DegP protease 1)	Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.	O.I.	H.G.	S.X.
0.34	39.8	0.89	At1g50320	841454	ATHX	encodes a prokaryotic thioredoxin	O.I.	H.G.	S.X.
0.33	38.1	0.89	At5g51110	835185	4-alpha-hydroxytetrahydrobiopterin dehydratase	F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF	O.I.	H.G.	S.X.
0.32	35.7	0.89	At5g66190	836751	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.	O.I.	H.G.	S.X.
0.31	33.8	0.89	At1g50900	841512	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO	O.I.	H.G.	S.X.
0.30	32.1	0.89	At3g59870	825157	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP	O.I.	H.G.	S.X.
0.30	32.1	0.89	At3g05350	819699	aminopeptidase/ hydrolase	F:hydrolase activity, aminopeptidase activity;P:proteolysis, cellular process;C:chloroplast, chloroplast stroma;BOMFAP	O.I.	H.G.	S.X.
0.29	30.3	0.89	At4g01150	828181	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO	O.I.	H.G.	S.X.
0.28	30.3	0.89	At1g11750	837719	CLPP6	One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).	O.I.	H.G.	S.X.
0.25	22.6	0.89	At5g13510	831195	ribosomal protein L10 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMF	O.I.	H.G.	S.X.
0.25	22.6	0.89	At3g56940	824861	CRD1 (COPPER RESPONSE DEFECT 1)	Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.6 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
65.2 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.7 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
57.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.4 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.3 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.2 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.4 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.2 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.2 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.6 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.5 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.2 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.2 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.8 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.4 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.9 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
33.3 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.0 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.5 99.7 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
26.5 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.0 99.6 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
20.2 99.6 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
20.2 99.6 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
19.2 99.6 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.0 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.4 99.4 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.7 99.3 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
11.2 99.2 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
10.7 99.2 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
9.8 99.1 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
9.4 99.1 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.2 99.1 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
67.6	99.9	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
65.2	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.9	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.7	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
57.9	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.4	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.3	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
56.2	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.4	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.2	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
55.0	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
54.6	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.2	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.6	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.6	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.5	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
51.2	99.8	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.2	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.8	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.4	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.9	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
33.3	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
30.0	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.5	99.7	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
26.5	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.0	99.6	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
20.2	99.6	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
20.2	99.6	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
19.2	99.6	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.0	99.5	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
14.4	99.4	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.7	99.3	GSM13780	Cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
11.2	99.2	GSM13784	Cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
10.7	99.2	GSM13779	Dexamethasone plus cycloheximide	GSE911	Identification of LEAFY targets during reproductive transition
9.8	99.1	GSM13783	Dexamethasone plus cycloheximide - replicate	GSE911	Identification of LEAFY targets during reproductive transition
9.4	99.1	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.2	99.1	GSM128661	Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1	GSE5520	Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.094 3 GO:0043085 Any process that activates or increases the activity of an enzyme.
0.066 2 GO:0045038 The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma.
0.065 2 GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

SF	Genes	GO ID	Process Name
0.094	3	GO:0043085	Any process that activates or increases the activity of an enzyme.
0.066	2	GO:0045038	The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma.
0.065	2	GO:0022900	A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.047 3 00195 Photosynthesis
0.029 1 00340 Histidine metabolism
0.025 1 00860 Porphyrin and chlorophyll metabolism

SF	Genes	KEGG ID	Pathway name
0.047	3	00195	Photosynthesis
0.029	1	00340	Histidine metabolism
0.025	1	00860	Porphyrin and chlorophyll metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g41940
Gene name	ZFP8 (ZINC FINGER PROTEIN 8)
Module size	55 genes
NF	0.42
%ile	59.0

Co-expression analysis

Gene ID At2g41940 Gene name ZFP8 (ZINC FINGER PROTEIN 8) Module size 55 genes NF 0.42 %ile 59.0

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.047300195Photosynthesis0.029100340Histidine metabolism0.025100860Porphyrin and chlorophyll metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g41940

Gene name ZFP8 (ZINC FINGER PROTEIN 8)

Module size 55 genes

NF 0.42

%ile 59.0

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.047 3 00195 Photosynthesis
0.029 1 00340 Histidine metabolism
0.025 1 00860 Porphyrin and chlorophyll metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays