CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g39850

Gene name identical protein binding / serine-type endopeptidase

Module size 7 genes

NF 0.46

%ile 64.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.47 61.2 1.00 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. H.G. S.X.
0.63 78.1 0.74 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.55 70.6 0.72 At1g64370 842744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBP O.I. H.G. S.X.
0.46 59.8 0.75 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV O.I. H.G. S.X.
0.38 46.7 0.84 At2g32860 817847 BGLU33 (BETA GLUCOSIDASE 33) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. H.G. S.X.
0.38 46.7 0.73 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA O.I. H.G. S.X.
0.22 17.5 0.75 At1g23130 838921 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.47	61.2	1.00	At2g39850	818572	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	H.G.	S.X.
0.63	78.1	0.74	At1g67865	843114	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.55	70.6	0.72	At1g64370	842744	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBP	O.I.	H.G.	S.X.
0.46	59.8	0.75	At1g67870	843115	glycine-rich protein	F:unknown;P:biological_process unknown;C:unknown;MOBPFAV	O.I.	H.G.	S.X.
0.38	46.7	0.84	At2g32860	817847	BGLU33 (BETA GLUCOSIDASE 33)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	H.G.	S.X.
0.38	46.7	0.73	At3g61210	825293	embryo-abundant protein-related	F:unknown;P:unknown;C:cellular_component unknown;BPFOMA	O.I.	H.G.	S.X.
0.22	17.5	0.75	At1g23130	838921	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
277.2 100.0 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
217.2 100.0 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
123.9 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
58.5 99.8 GSM131585 ATGE_34_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
49.3 99.8 GSM131586 ATGE_34_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
45.2 99.8 GSM131587 ATGE_34_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
35.0 99.7 GSM133818 Yang_1-3_young-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
25.4 99.6 E-MEXP-1451-raw-cel-1585200202
24.6 99.6 E-MEXP-1451-raw-cel-1585200234
23.7 99.6 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
22.6 99.6 E-MEXP-1451-raw-cel-1585200266
22.3 99.6 E-MEXP-1451-raw-cel-1585200170
21.5 99.6 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
19.9 99.6 E-MEXP-1451-raw-cel-1585200298
17.2 99.5 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.5 99.5 GSM131615 ATGE_53_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.6 99.4 E-MEXP-1451-raw-cel-1585200362
14.4 99.4 E-MEXP-1443-raw-cel-1581869515
14.4 99.4 GSM62698 arf6/arf6 ARF8/arf8 flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
13.2 99.4 GSM131617 ATGE_53_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.8 99.3 GSM131616 ATGE_53_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
12.5 99.3 GSM62699 arf6/arf6 ARF8/arf8 flowers_stage 11-12 GSE2848 Auxin Response Factor mediated flower gene expression
12.5 99.3 E-MEXP-265-raw-cel-414617695
12.1 99.3 E-MEXP-265-raw-cel-414619001
11.8 99.3 E-MEXP-1451-raw-cel-1585200330
11.2 99.2 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
10.1 99.2 E-MEXP-1592-raw-cel-1617526960
9.6 99.1 E-MEXP-265-raw-cel-414617783
9.2 99.1 GSM232889 Wt.3-1.0 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
9.1 99.1 E-MEXP-265-raw-cel-414618900

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
277.2	100.0	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
217.2	100.0	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
123.9	99.9	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
58.5	99.8	GSM131585	ATGE_34_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
49.3	99.8	GSM131586	ATGE_34_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
45.2	99.8	GSM131587	ATGE_34_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
35.0	99.7	GSM133818	Yang_1-3_young-pod_Rep2_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
25.4	99.6	E-MEXP-1451-raw-cel-1585200202
24.6	99.6	E-MEXP-1451-raw-cel-1585200234
23.7	99.6	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
22.6	99.6	E-MEXP-1451-raw-cel-1585200266
22.3	99.6	E-MEXP-1451-raw-cel-1585200170
21.5	99.6	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
19.9	99.6	E-MEXP-1451-raw-cel-1585200298
17.2	99.5	GSM133821	Yang_1-6_old-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.5	99.5	GSM131615	ATGE_53_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
14.6	99.4	E-MEXP-1451-raw-cel-1585200362
14.4	99.4	E-MEXP-1443-raw-cel-1581869515
14.4	99.4	GSM62698	arf6/arf6 ARF8/arf8 flowers_stage 1-10	GSE2848	Auxin Response Factor mediated flower gene expression
13.2	99.4	GSM131617	ATGE_53_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.8	99.3	GSM131616	ATGE_53_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
12.5	99.3	GSM62699	arf6/arf6 ARF8/arf8 flowers_stage 11-12	GSE2848	Auxin Response Factor mediated flower gene expression
12.5	99.3	E-MEXP-265-raw-cel-414617695
12.1	99.3	E-MEXP-265-raw-cel-414619001
11.8	99.3	E-MEXP-1451-raw-cel-1585200330
11.2	99.2	GSM184924	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
10.1	99.2	E-MEXP-1592-raw-cel-1617526960
9.6	99.1	E-MEXP-265-raw-cel-414617783
9.2	99.1	GSM232889	Wt.3-1.0	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
9.1	99.1	E-MEXP-265-raw-cel-414618900

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.049 1 GO:0009607 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
0.036 1 GO:0043086 Any process that stops or reduces the activity of an enzyme.
0.022 1 GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.

SF	Genes	GO ID	Process Name
0.049	1	GO:0009607	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
0.036	1	GO:0043086	Any process that stops or reduces the activity of an enzyme.
0.022	1	GO:0050832	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g39850
Gene name	identical protein binding / serine-type endopeptidase
Module size	7 genes
NF	0.46
%ile	64.3

Co-expression analysis

Gene ID At2g39850 Gene name identical protein binding / serine-type endopeptidase Module size 7 genes NF 0.46 %ile 64.3

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g39850

Gene name identical protein binding / serine-type endopeptidase

Module size 7 genes

NF 0.46

%ile 64.3

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays