CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g39110

Gene name protein kinase, putative

Module size 7 genes

NF 0.39

%ile 53.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.43 55.3 1.00 At2g39110 818497 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.46 59.8 0.77 At3g14940 820723 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3) One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. O.I. H.G. S.X.
0.44 57.2 0.77 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. O.I. H.G. S.X.
0.40 50.8 0.77 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. H.G. S.X.
0.33 38.1 0.77 At2g27000 817242 CYP705A8 member of CYP705A O.I. H.G. S.X.
0.31 33.8 0.80 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. O.I. H.G. S.X.
0.25 22.6 0.80 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.43	55.3	1.00	At2g39110	818497	protein kinase, putative	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	H.G.	S.X.
0.46	59.8	0.77	At3g14940	820723	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.	O.I.	H.G.	S.X.
0.44	57.2	0.77	At5g51060	835179	RHD2 (ROOT HAIR DEFECTIVE 2)	RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.	O.I.	H.G.	S.X.
0.40	50.8	0.77	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	H.G.	S.X.
0.33	38.1	0.77	At2g27000	817242	CYP705A8	member of CYP705A	O.I.	H.G.	S.X.
0.31	33.8	0.80	At5g17330	831599	GAD	Encodes one of two isoforms of glutamate decarboxylase.	O.I.	H.G.	S.X.
0.25	22.6	0.80	At1g69810	843317	WRKY36	member of WRKY Transcription Factor; Group II-b	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
113.6 99.9 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
103.6 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
73.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
72.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.9 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.6 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.9 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.9 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.6 99.8 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.9 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
51.8 99.8 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
50.2 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
41.9 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.1 99.8 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
36.3 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.8 99.7 GSM142728 CH001_ATH1_A007-Hampt-c4b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
35.7 99.7 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
35.1 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.8 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.0 99.7 GSM142732 CH001_ATH1_A011-Hampt-c4c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
31.8 99.7 E-MEXP-828-raw-cel-1156922342
31.4 99.7 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
29.6 99.7 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
29.5 99.7 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
27.4 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.0 99.6 GSM128703 Heinekamp_1-12_cs-root_Rep3_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
22.2 99.6 GSM184905 Arabidopsis, root cells, protophloem, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
22.0 99.6 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
21.6 99.6 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
21.5 99.6 GSM131688 ATGE_77_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
20.8 99.6 E-MEXP-285-raw-cel-440783152
20.5 99.6 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
20.3 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.9 99.6 E-MEXP-285-raw-cel-440783213
19.5 99.6 E-MEXP-828-raw-cel-1156922368
19.2 99.6 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
18.1 99.5 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
17.9 99.5 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.8 99.5 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
17.7 99.5 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
17.6 99.5 GSM131692 ATGE_78_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
17.6 99.5 E-MEXP-828-raw-cel-1156922467
17.4 99.5 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
17.0 99.5 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
17.0 99.5 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
16.6 99.5 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
16.0 99.5 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
15.8 99.5 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
15.7 99.5 GSM133818 Yang_1-3_young-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.5 99.5 GSM184932 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
15.3 99.4 GSM184634 Arabidopsis, root cells, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
15.0 99.4 GSM142725 CH001_ATH1_A004-Hampt-c1a GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
15.0 99.4 E-ATMX-1-raw-cel-1112746095
14.9 99.4 GSM157310 Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
14.8 99.4 GSM142730 CH001_ATH1_A009-Hampt-wsc_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.7 99.4 GSM157309 Gan_1-5_wildtype-nitrate-continuous(WNC)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
14.5 99.4 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.3 99.4 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
14.2 99.4 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
14.2 99.4 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
14.1 99.4 GSM184560 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 GSM184559 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.9 99.4 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
13.8 99.4 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
13.7 99.4 GSM142723 CH001_ATH1_A002-Hampt-aka GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
13.4 99.4 GSM142724 CH001_ATH1_A003-Hampt-c4a_repeat GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
13.4 99.4 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
13.3 99.4 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
13.1 99.4 E-MEXP-509-raw-cel-829148561
13.1 99.4 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
12.9 99.3 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
12.5 99.3 GSM184561 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.4 99.3 GSM184930 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
12.3 99.3 E-MEXP-828-raw-cel-1156922509
12.3 99.3 GSM157314 Hammond_3-4_Control-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
12.0 99.3 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
12.0 99.3 GSM184929 Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
11.7 99.3 GSM184635 Arabidopsis, root cells, 140 mM NaCl, replicate 2 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
11.6 99.3 E-MEXP-828-raw-cel-1156922809
11.2 99.2 GSM131691 ATGE_78_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.1 99.2 GSM157307 Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
10.8 99.2 E-MEXP-828-raw-cel-1156922905
10.7 99.2 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6 99.2 GSM184927 Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
10.5 99.2 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
10.4 99.2 GSM133893 Schroeder_1-9_JS46-starve-48h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
10.4 99.2 E-ATMX-1-raw-cel-1112746154
10.2 99.2 GSM75513 Col-0 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
10.2 99.2 E-MEXP-1451-raw-cel-1585200298
10.1 99.2 GSM133891 Schroeder_1-3_JS45-control-48h_Rep1_ATH1 GSE5744 Response to potassium starvation in roots
10.1 99.2 GSM142729 CH001_ATH1_A008-Hampt-c1b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.1 99.2 E-MEXP-828-raw-cel-1156922455
10.0 99.2 GSM184928 Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
10.0 99.2 GSM75518 slr-1 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
10.0 99.2 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
9.9 99.1 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
9.9 99.1 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
9.6 99.1 GSM184936 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
9.5 99.1 GSM142731 CH001_ATH1_A010-Hampt-akc GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
9.4 99.1 GSM128699 Heinekamp_1-8_cs-root_Rep2_ATH1 GSE5522 Low chronic exposure of Arabidopsis thaliana to Caesium-137
9.3 99.1 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0 99.1 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.8 99.0 E-MEXP-828-raw-cel-1156922829
8.7 99.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6 99.0 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
113.6	99.9	GSM311294	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
103.6	99.9	GSM311296	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
73.6	99.9	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
72.7	99.9	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
65.9	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
64.6	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
64.4	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.9	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.9	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
54.6	99.8	GSM226554	Slice12JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.9	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
51.8	99.8	GSM311293	Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
50.2	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
41.9	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.1	99.8	GSM131696	ATGE_79_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
36.3	99.7	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.8	99.7	GSM142728	CH001_ATH1_A007-Hampt-c4b	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
35.7	99.7	GSM184906	Arabidopsis, root cells, protophloem, standard conditions, replicate 3	GSE7641	Expression analysis of root cell-types after treatment with salt
35.1	99.7	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.8	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
32.0	99.7	GSM142732	CH001_ATH1_A011-Hampt-c4c	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
31.8	99.7	E-MEXP-828-raw-cel-1156922342
31.4	99.7	GSM131694	ATGE_79_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
29.6	99.7	GSM184922	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
29.5	99.7	GSM184904	Arabidopsis, root cells, protophloem, standard conditions, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
27.4	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
25.0	99.6	GSM128703	Heinekamp_1-12_cs-root_Rep3_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
22.2	99.6	GSM184905	Arabidopsis, root cells, protophloem, standard conditions, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
22.0	99.6	GSM131699	ATGE_81_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
21.6	99.6	GSM184846	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2	GSE7639	Expression analysis of root developmental zones after treatment with salt
21.5	99.6	GSM131688	ATGE_77_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
20.8	99.6	E-MEXP-285-raw-cel-440783152
20.5	99.6	GSM157324	Hammond_3-17_Potassium-starved-root_Rep3_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
20.3	99.6	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
19.9	99.6	E-MEXP-285-raw-cel-440783213
19.5	99.6	E-MEXP-828-raw-cel-1156922368
19.2	99.6	GSM131695	ATGE_79_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
18.1	99.5	GSM10480	lec1-1 Cotyledon Stage Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
17.9	99.5	GSM226541	L11SB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.8	99.5	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
17.7	99.5	GSM157327	Hammond_3-11_Potassium-starved-root_Rep2_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
17.6	99.5	GSM131692	ATGE_78_E	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
17.6	99.5	E-MEXP-828-raw-cel-1156922467
17.4	99.5	GSM131697	ATGE_81_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
17.0	99.5	GSM157315	Hammond_3-5_Potassium-starved-root_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
17.0	99.5	GSM75514	Col-0 6h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
16.6	99.5	GSM311295	Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1	GSE12403	Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
16.0	99.5	GSM75510	Col-0 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
15.8	99.5	GSM184934	Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
15.7	99.5	GSM133818	Yang_1-3_young-pod_Rep2_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
15.5	99.5	GSM184932	Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
15.3	99.4	GSM184634	Arabidopsis, root cells, 140 mM NaCl, replicate 1	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
15.0	99.4	GSM142725	CH001_ATH1_A004-Hampt-c1a	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
15.0	99.4	E-ATMX-1-raw-cel-1112746095
14.9	99.4	GSM157310	Gan_1-6_mutant-nitrate-continuous(ANC)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
14.8	99.4	GSM142730	CH001_ATH1_A009-Hampt-wsc_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
14.7	99.4	GSM157309	Gan_1-5_wildtype-nitrate-continuous(WNC)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
14.5	99.4	GSM284395	Arabidopsis GPSc1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.3	99.4	GSM184923	Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
14.2	99.4	GSM184845	Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1	GSE7639	Expression analysis of root developmental zones after treatment with salt
14.2	99.4	GSM157306	Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
14.1	99.4	GSM184560	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.9	99.4	GSM184559	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.9	99.4	GSM226553	Slice11JW	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
13.8	99.4	GSM157305	Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
13.7	99.4	GSM142723	CH001_ATH1_A002-Hampt-aka	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
13.4	99.4	GSM142724	CH001_ATH1_A003-Hampt-c4a_repeat	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
13.4	99.4	GSM67086	Arabidopsis_Stigma02	GSE3056	Arabidopsis Pollination Study
13.3	99.4	GSM184911	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2	GSE7641	Expression analysis of root cell-types after treatment with salt
13.1	99.4	E-MEXP-509-raw-cel-829148561
13.1	99.4	GSM131698	ATGE_81_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
12.9	99.3	GSM184910	Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1	GSE7641	Expression analysis of root cell-types after treatment with salt
12.5	99.3	GSM184561	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes with KNO3, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.4	99.3	GSM184930	Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
12.3	99.3	E-MEXP-828-raw-cel-1156922509
12.3	99.3	GSM157314	Hammond_3-4_Control-root_Rep1_ATH1	GSE6825	Differential gene expression patterns in potassium-starved and Caesium-treated plants
12.0	99.3	GSM184539	Whole roots 2hr KCl control treated then frozen, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
12.0	99.3	GSM184929	Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
11.7	99.3	GSM184635	Arabidopsis, root cells, 140 mM NaCl, replicate 2	GSE7636	Expression analysis of the effect of protoplasting and FACS sorting in roots
11.6	99.3	E-MEXP-828-raw-cel-1156922809
11.2	99.2	GSM131691	ATGE_78_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.1	99.2	GSM157307	Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1	GSE6824	Identification of genes involved in nutritional regulation of root architecture
10.8	99.2	E-MEXP-828-raw-cel-1156922905
10.7	99.2	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6	99.2	GSM184927	Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 1	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
10.5	99.2	GSM67087	Arabidopsis_Stigma03	GSE3056	Arabidopsis Pollination Study
10.4	99.2	GSM133893	Schroeder_1-9_JS46-starve-48h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
10.4	99.2	E-ATMX-1-raw-cel-1112746154
10.2	99.2	GSM75513	Col-0 2h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.2	99.2	E-MEXP-1451-raw-cel-1585200298
10.1	99.2	GSM133891	Schroeder_1-3_JS45-control-48h_Rep1_ATH1	GSE5744	Response to potassium starvation in roots
10.1	99.2	GSM142729	CH001_ATH1_A008-Hampt-c1b	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
10.1	99.2	E-MEXP-828-raw-cel-1156922455
10.0	99.2	GSM184928	Arabidopsis, whole roots, 140 mM NaCl, 30 minutes, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
10.0	99.2	GSM75518	slr-1 6h NAA replicate 1	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
10.0	99.2	GSM184837	Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7	GSE7639	Expression analysis of root developmental zones after treatment with salt
9.9	99.1	GSM10479	lec1-1 Cotyledon Stage Seed 1	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
9.9	99.1	GSM75519	slr-1 0h NAA replicate 2	GSE3350	SLR/IAA14-dependent auxin induced lateral root initiation
9.6	99.1	GSM184936	Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2	GSE7642	Time course expression analysis of the salt stress response in Arabidopsis roots
9.5	99.1	GSM142731	CH001_ATH1_A010-Hampt-akc	GSE6161	Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
9.4	99.1	GSM128699	Heinekamp_1-8_cs-root_Rep2_ATH1	GSE5522	Low chronic exposure of Arabidopsis thaliana to Caesium-137
9.3	99.1	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0	99.1	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.8	99.0	E-MEXP-828-raw-cel-1156922829
8.7	99.0	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.6	99.0	GSM184545	Whole roots 2hr KNO3 treated then frozen, biological rep3	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0033198 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus.
0.154 1 GO:0009060 The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
0.105 1 GO:0010053 The process whereby a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.

SF	Genes	GO ID	Process Name
0.250	1	GO:0033198	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus.
0.154	1	GO:0009060	The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
0.105	1	GO:0010053	The process whereby a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.182 1 00430 Taurine and hypotaurine metabolism
0.083 1 00410 beta-Alanine metabolism
0.069 1 00650 Butanoate metabolism

SF	Genes	KEGG ID	Pathway name
0.182	1	00430	Taurine and hypotaurine metabolism
0.083	1	00410	beta-Alanine metabolism
0.069	1	00650	Butanoate metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g39110
Gene name	protein kinase, putative
Module size	7 genes
NF	0.39
%ile	53.6

Co-expression analysis

Gene ID At2g39110 Gene name protein kinase, putative Module size 7 genes NF 0.39 %ile 53.6

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.182100430Taurine and hypotaurine metabolism0.083100410beta-Alanine metabolism0.069100650Butanoate metabolism

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g39110

Gene name protein kinase, putative

Module size 7 genes

NF 0.39

%ile 53.6

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.182 1 00430 Taurine and hypotaurine metabolism
0.083 1 00410 beta-Alanine metabolism
0.069 1 00650 Butanoate metabolism

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays