Co-expression analysis

Gene ID At2g37730
Gene name fringe-related protein
Module size 15 genes
NF 0.43
%ile 59.7



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g37730818350fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.H.G.S.X.
0.7184.20.86At5g44270834450-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.6478.90.85At1g437153767310transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.86At4g077903769958transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.5065.30.86At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVO.I.H.G.S.X.
0.4659.80.85At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4355.30.85At3g422203769425transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.80.85At5g332603771121transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3338.10.85At4g38070829963bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAVO.I.H.G.S.X.
0.3338.10.86At5g35830833569ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.H.G.S.X.
0.3032.10.85At2g069803767746transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.30.85At1g566753767473transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2726.20.86At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.2624.40.85At2g107403767791transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.70.87At2g29920817542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
82.299.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
81.399.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
80.999.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
78.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
77.899.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
77.099.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
76.599.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
75.999.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
75.799.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
74.099.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
72.599.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
71.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
70.399.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
69.399.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
69.199.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
69.199.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
68.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
67.099.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
61.499.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
61.199.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
59.599.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
56.199.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
51.399.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
37.099.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
33.999.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
15.999.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
15.299.4GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
14.799.4GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
14.099.4GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expressionLink to GEO
13.199.4GSM242961Mock day 7 (day7E1)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
12.699.3GSM242962Mock day 7 (day7E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
12.599.3GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum StressLink to GEO
11.599.3E-MEXP-148-raw-cel-350529179
10.699.2GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
9.399.1GSM189112HSP90_Reduced_RNAi-A3_Biological_Replicate_2_Technical_Replicate_1GSE7796Phenotypic Diversity and Altered Environmental Plasticity in Arabidopsis thaliana with Reduced HSP90 LevelsLink to GEO
9.099.1GSM242956Steroid day 1 (day1D2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO
8.899.0GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in ArabidopsisLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0571GO:0006306The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.026100270Cysteine and methionine metabolismLink to KEGG PATHWAY
0.002101100Metabolic pathwaysLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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