CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g37060

Gene name NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)

Module size 62 genes

NF 0.57

%ile 79.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.81 90.4 1.00 At2g37060 818282 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. H.G. S.X.
0.82 90.9 0.86 At3g03970 819552 binding F:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;P O.I. H.G. S.X.
0.78 88.6 0.81 At1g05380 837039 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFAB O.I. H.G. S.X.
0.78 88.6 0.82 At5g02910 831746 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. H.G. S.X.
0.77 88.0 0.79 At2g44660 819074 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum membrane;MFOPB O.I. H.G. S.X.
0.75 86.9 0.80 At2g26470 817188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFAPV O.I. H.G. S.X.
0.74 86.1 0.83 At5g64930 836617 CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR). O.I. H.G. S.X.
0.74 86.1 0.83 At1g17040 838274 SHA (SH2 DOMAIN PROTEIN A) Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. O.I. H.G. S.X.
0.71 84.2 0.79 At1g47490 841157 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) F:RNA binding;P:unknown;C:unknown;MPFOBVA O.I. H.G. S.X.
0.71 84.2 0.82 At3g58800 825049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PVO O.I. H.G. S.X.
0.70 83.5 0.79 At2g31650 817721 ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX) Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P. O.I. H.G. S.X.
0.69 82.9 0.80 At3g20040 821543 ATHXK4 F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:glucose catabolic process to butanediol, glucose catabolic process to lactate and acetate, glycolysis, anaerobic glycolysis, glucose catabolic process to D-lactate and ethanol;C:mitochondrion;MFPOB O.I. H.G. S.X.
0.69 82.9 0.80 At2g02090 814740 ETL1 F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA O.I. H.G. S.X.
0.68 82.2 0.80 At5g01450 831860 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVF O.I. H.G. S.X.
0.67 81.6 0.79 At1g12640 837820 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFP O.I. H.G. S.X.
0.67 81.6 0.78 At3g06190 819793 BPM2 (BTB-POZ AND MATH DOMAIN 2) F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.66 80.1 0.78 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA O.I. H.G. S.X.
0.66 80.1 0.78 At1g19370 838520 unknown protein F:unknown;P:unknown;C:endoplasmic reticulum;PO O.I. H.G. S.X.
0.66 80.1 0.79 At1g66730 842991 ATP dependent DNA ligase family protein F:DNA binding, DNA ligase (ATP) activity, ATP binding;P:DNA repair, DNA replication, DNA recombination;C:chloroplast;BOMFAVP O.I. H.G. S.X.
0.66 80.1 0.79 At5g58510 835964 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOB O.I. H.G. S.X.
0.65 79.6 0.77 At5g17780 831646 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV O.I. H.G. S.X.
0.65 79.6 0.79 At5g02100 831841 UNE18 (UNFERTILIZED EMBRYO SAC 18) Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. O.I. H.G. S.X.
0.64 78.9 0.77 At2g31270 817684 CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A) Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast. O.I. H.G. S.X.
0.63 78.1 0.80 At1g78895 844227 - F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P O.I. H.G. S.X.
0.63 78.1 0.78 At2g27050 817247 EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) ethylene-insensitive3-like1 (EIL1) O.I. H.G. S.X.
0.63 78.1 0.80 At3g20770 821625 EIN3 (ETHYLENE-INSENSITIVE3) ethylene-insensitive3 O.I. H.G. S.X.
0.61 76.7 0.80 At1g16330 838202 CYCB3 core cell cycle genes O.I. H.G. S.X.
0.60 75.7 0.82 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV O.I. H.G. S.X.
0.60 75.7 0.80 At3g59550 825124 SYN3 Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes. O.I. H.G. S.X.
0.59 74.7 0.79 At3g07020 819887 UDP-glucose:sterol glucosyltransferase (UGT80A2) F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV O.I. H.G. S.X.
0.58 73.8 0.80 At1g07210 837232 30S ribosomal protein S18 family F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMF O.I. H.G. S.X.
0.58 73.8 0.79 At1g47570 841166 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. H.G. S.X.
0.58 73.8 0.79 At2g45490 819157 AtAUR3 (ATAURORA3) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells. O.I. H.G. S.X.
0.56 73.0 0.81 At1g05120 839319 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 6 functions;P:unknown;C:unknown;MFBOPVA O.I. H.G. S.X.
0.56 73.0 0.80 At3g12140 820389 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.56 73.0 0.80 At5g25380 832610 CYCA2 core cell cycle genes O.I. H.G. S.X.
0.55 70.6 0.79 At2g28320 817379 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:plasma membrane;PMO O.I. H.G. S.X.
0.54 69.5 0.79 At4g31420 829269 zinc finger (C2H2 type) family protein F:transcription factor activity;P:regulation of transcription;C:intracellular;MFOP O.I. H.G. S.X.
0.53 68.6 0.80 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene O.I. H.G. S.X.
0.52 67.4 0.77 At2g26800 817221 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative F:hydroxymethylglutaryl-CoA lyase activity, catalytic activity;P:leucine metabolic process, metabolic process;C:mitochondrion;BOAFMP O.I. H.G. S.X.
0.51 66.3 0.78 At2g30320 817582 tRNA pseudouridine synthase family protein F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:unknown;OBMFPA O.I. H.G. S.X.
0.51 66.3 0.79 At1g70590 843396 F-box family protein F:binding;P:biological_process unknown;C:chloroplast;BOFMPV O.I. H.G. S.X.
0.50 65.3 0.77 At3g15620 820804 UVR3 (UV REPAIR DEFECTIVE 3) Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. O.I. H.G. S.X.
0.50 65.3 0.82 At5g49220 834982 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.50 65.3 0.77 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family O.I. H.G. S.X.
0.50 65.3 0.79 At3g01320 821265 SNL1 (SIN3-LIKE 1) Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190). O.I. H.G. S.X.
0.50 65.3 0.77 At4g32440 829379 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.50 65.3 0.79 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA O.I. H.G. S.X.
0.49 63.5 0.78 At5g46250 834667 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPFO O.I. H.G. S.X.
0.49 63.5 0.81 At1g11100 837651 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related F:in 6 functions;P:unknown;C:unknown;MBFOPVA O.I. H.G. S.X.
0.49 63.5 0.79 At3g48440 824003 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. H.G. S.X.
0.49 63.5 0.77 At3g24740 822072 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.48 62.5 0.78 At1g35530 840448 DEAD/DEAH box helicase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.48 62.5 0.80 At3g03110 821074 XPO1B Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes. O.I. H.G. S.X.
0.46 59.8 0.78 At5g22750 832338 RAD5 DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer O.I. H.G. S.X.
0.45 58.3 0.79 At5g65000 836624 nucleotide-sugar transporter family protein F:nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:integral to membrane, Golgi membrane;MPOFAB O.I. H.G. S.X.
0.45 58.3 0.80 At1g71350 843476 eukaryotic translation initiation factor SUI1 family protein F:RNA binding, translation initiation factor activity;P:translational initiation;C:unknown;MFOPA O.I. H.G. S.X.
0.44 57.2 0.78 At3g17770 821045 dihydroxyacetone kinase family protein F:glycerone kinase activity, ATP binding;P:glycerol metabolic process;C:cellular_component unknown;BOFMPA O.I. H.G. S.X.
0.44 57.2 0.78 At3g12530 820432 PSF2 F:molecular_function unknown;P:DNA replication;C:nucleus;MFOP O.I. H.G. S.X.
0.44 57.2 0.80 At3g46830 823836 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV O.I. H.G. S.X.
0.42 53.9 0.80 At5g55300 835623 TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. O.I. H.G. S.X.
0.36 43.6 0.77 At5g16800 831543 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOBPAFV O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.81	90.4	1.00	At2g37060	818282	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	H.G.	S.X.
0.82	90.9	0.86	At3g03970	819552	binding	F:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.78	88.6	0.81	At1g05380	837039	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFAB	O.I.	H.G.	S.X.
0.78	88.6	0.82	At5g02910	831746	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	H.G.	S.X.
0.77	88.0	0.79	At2g44660	819074	transferase, transferring glycosyl groups / transferase, transferring hexosyl groups	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum membrane;MFOPB	O.I.	H.G.	S.X.
0.75	86.9	0.80	At2g26470	817188	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFAPV	O.I.	H.G.	S.X.
0.74	86.1	0.83	At5g64930	836617	CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)	Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).	O.I.	H.G.	S.X.
0.74	86.1	0.83	At1g17040	838274	SHA (SH2 DOMAIN PROTEIN A)	Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	O.I.	H.G.	S.X.
0.71	84.2	0.79	At1g47490	841157	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	F:RNA binding;P:unknown;C:unknown;MPFOBVA	O.I.	H.G.	S.X.
0.71	84.2	0.82	At3g58800	825049	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PVO	O.I.	H.G.	S.X.
0.70	83.5	0.79	At2g31650	817721	ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX)	Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.	O.I.	H.G.	S.X.
0.69	82.9	0.80	At3g20040	821543	ATHXK4	F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:glucose catabolic process to butanediol, glucose catabolic process to lactate and acetate, glycolysis, anaerobic glycolysis, glucose catabolic process to D-lactate and ethanol;C:mitochondrion;MFPOB	O.I.	H.G.	S.X.
0.69	82.9	0.80	At2g02090	814740	ETL1	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA	O.I.	H.G.	S.X.
0.68	82.2	0.80	At5g01450	831860	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPVF	O.I.	H.G.	S.X.
0.67	81.6	0.79	At1g12640	837820	membrane bound O-acyl transferase (MBOAT) family protein	F:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFP	O.I.	H.G.	S.X.
0.67	81.6	0.78	At3g06190	819793	BPM2 (BTB-POZ AND MATH DOMAIN 2)	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.66	80.1	0.78	At5g58760	835990	DDB2 (damaged DNA-binding 2)	F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	H.G.	S.X.
0.66	80.1	0.78	At1g19370	838520	unknown protein	F:unknown;P:unknown;C:endoplasmic reticulum;PO	O.I.	H.G.	S.X.
0.66	80.1	0.79	At1g66730	842991	ATP dependent DNA ligase family protein	F:DNA binding, DNA ligase (ATP) activity, ATP binding;P:DNA repair, DNA replication, DNA recombination;C:chloroplast;BOMFAVP	O.I.	H.G.	S.X.
0.66	80.1	0.79	At5g58510	835964	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOB	O.I.	H.G.	S.X.
0.65	79.6	0.77	At5g17780	831646	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV	O.I.	H.G.	S.X.
0.65	79.6	0.79	At5g02100	831841	UNE18 (UNFERTILIZED EMBRYO SAC 18)	Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	O.I.	H.G.	S.X.
0.64	78.9	0.77	At2g31270	817684	CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A)	Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast.	O.I.	H.G.	S.X.
0.63	78.1	0.80	At1g78895	844227	-	F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P	O.I.	H.G.	S.X.
0.63	78.1	0.78	At2g27050	817247	EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)	ethylene-insensitive3-like1 (EIL1)	O.I.	H.G.	S.X.
0.63	78.1	0.80	At3g20770	821625	EIN3 (ETHYLENE-INSENSITIVE3)	ethylene-insensitive3	O.I.	H.G.	S.X.
0.61	76.7	0.80	At1g16330	838202	CYCB3	core cell cycle genes	O.I.	H.G.	S.X.
0.60	75.7	0.82	At4g02730	828189	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV	O.I.	H.G.	S.X.
0.60	75.7	0.80	At3g59550	825124	SYN3	Encodes an alpha-kleisin protein that is localized primarily in the nucleolus and is essential for megagametogenesis and plays an important role in pollen development. alpha-kleisins are core components of meiotic and mitotic cohesin complexes.	O.I.	H.G.	S.X.
0.59	74.7	0.79	At3g07020	819887	UDP-glucose:sterol glucosyltransferase (UGT80A2)	F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV	O.I.	H.G.	S.X.
0.58	73.8	0.80	At1g07210	837232	30S ribosomal protein S18 family	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMF	O.I.	H.G.	S.X.
0.58	73.8	0.79	At1g47570	841166	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	H.G.	S.X.
0.58	73.8	0.79	At2g45490	819157	AtAUR3 (ATAURORA3)	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.	O.I.	H.G.	S.X.
0.56	73.0	0.81	At1g05120	839319	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 6 functions;P:unknown;C:unknown;MFBOPVA	O.I.	H.G.	S.X.
0.56	73.0	0.80	At3g12140	820389	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.56	73.0	0.80	At5g25380	832610	CYCA2	core cell cycle genes	O.I.	H.G.	S.X.
0.55	70.6	0.79	At2g28320	817379	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	F:phosphoinositide binding;P:signal transduction;C:plasma membrane;PMO	O.I.	H.G.	S.X.
0.54	69.5	0.79	At4g31420	829269	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:regulation of transcription;C:intracellular;MFOP	O.I.	H.G.	S.X.
0.53	68.6	0.80	At5g54280	835516	ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)	Type VII myosin gene	O.I.	H.G.	S.X.
0.52	67.4	0.77	At2g26800	817221	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	F:hydroxymethylglutaryl-CoA lyase activity, catalytic activity;P:leucine metabolic process, metabolic process;C:mitochondrion;BOAFMP	O.I.	H.G.	S.X.
0.51	66.3	0.78	At2g30320	817582	tRNA pseudouridine synthase family protein	F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:unknown;OBMFPA	O.I.	H.G.	S.X.
0.51	66.3	0.79	At1g70590	843396	F-box family protein	F:binding;P:biological_process unknown;C:chloroplast;BOFMPV	O.I.	H.G.	S.X.
0.50	65.3	0.77	At3g15620	820804	UVR3 (UV REPAIR DEFECTIVE 3)	Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.	O.I.	H.G.	S.X.
0.50	65.3	0.82	At5g49220	834982	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.50	65.3	0.77	At4g30560	829179	ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)	member of Cyclic nucleotide gated channel family	O.I.	H.G.	S.X.
0.50	65.3	0.79	At3g01320	821265	SNL1 (SIN3-LIKE 1)	Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).	O.I.	H.G.	S.X.
0.50	65.3	0.77	At4g32440	829379	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;P	O.I.	H.G.	S.X.
0.50	65.3	0.79	At5g05130	830395	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 7 functions;P:unknown;C:unknown;MOBFPVA	O.I.	H.G.	S.X.
0.49	63.5	0.78	At5g46250	834667	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPFO	O.I.	H.G.	S.X.
0.49	63.5	0.81	At1g11100	837651	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related	F:in 6 functions;P:unknown;C:unknown;MBFOPVA	O.I.	H.G.	S.X.
0.49	63.5	0.79	At3g48440	824003	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	H.G.	S.X.
0.49	63.5	0.77	At3g24740	822072	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.48	62.5	0.78	At1g35530	840448	DEAD/DEAH box helicase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	H.G.	S.X.
0.48	62.5	0.80	At3g03110	821074	XPO1B	Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes.	O.I.	H.G.	S.X.
0.46	59.8	0.78	At5g22750	832338	RAD5	DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer	O.I.	H.G.	S.X.
0.45	58.3	0.79	At5g65000	836624	nucleotide-sugar transporter family protein	F:nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:integral to membrane, Golgi membrane;MPOFAB	O.I.	H.G.	S.X.
0.45	58.3	0.80	At1g71350	843476	eukaryotic translation initiation factor SUI1 family protein	F:RNA binding, translation initiation factor activity;P:translational initiation;C:unknown;MFOPA	O.I.	H.G.	S.X.
0.44	57.2	0.78	At3g17770	821045	dihydroxyacetone kinase family protein	F:glycerone kinase activity, ATP binding;P:glycerol metabolic process;C:cellular_component unknown;BOFMPA	O.I.	H.G.	S.X.
0.44	57.2	0.78	At3g12530	820432	PSF2	F:molecular_function unknown;P:DNA replication;C:nucleus;MFOP	O.I.	H.G.	S.X.
0.44	57.2	0.80	At3g46830	823836	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endosome, plasma membrane, cell plate;MOFPBAV	O.I.	H.G.	S.X.
0.42	53.9	0.80	At5g55300	835623	TOP1ALPHA (DNA TOPOISOMERASE I ALPHA)	Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.	O.I.	H.G.	S.X.
0.36	43.6	0.77	At5g16800	831543	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOBPAFV	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.7 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.9 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.5 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.3 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.3 99.8 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.9 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.4 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.8 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.5 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.9 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
38.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.2 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.7 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.1 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
32.3 99.7 E-ATMX-35-raw-cel-1574334816
26.7 99.7 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.6 99.7 E-ATMX-35-raw-cel-1574334832
25.4 99.6 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.3 99.6 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
23.4 99.6 E-ATMX-35-raw-cel-1574334800
21.7 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.3 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.9 99.5 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.7 99.4 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
13.6 99.4 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.4 99.4 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
11.4 99.3 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.4 99.2 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.7 99.1 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
49.3	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
45.7	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.9	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.9	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.5	99.8	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.3	99.8	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
43.3	99.8	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
42.9	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.4	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.8	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3	99.8	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.3	99.8	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
40.8	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.5	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.9	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.8	99.8	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.6	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
38.3	99.8	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
37.2	99.7	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.7	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.1	99.7	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
32.3	99.7	E-ATMX-35-raw-cel-1574334816
26.7	99.7	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
26.6	99.7	E-ATMX-35-raw-cel-1574334832
25.4	99.6	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.3	99.6	GSM184477	Lateral Root Cap root cells 2hr KCl control treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
23.4	99.6	E-ATMX-35-raw-cel-1574334800
21.7	99.6	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.3	99.6	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.9	99.5	GSM184480	Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.7	99.4	GSM184483	Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
13.6	99.4	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.4	99.4	GSM133945	Murray_2-1_T0-APH_Rep1_ATH1	GSE5747	Genome-wide cell cycle studies
11.4	99.3	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
11.0	99.2	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
10.4	99.2	GSM226530	LCOLUMELLASB	GSE8934	A high resolution organ expression map reveals novel expression patterns and predicts cellular function
9.7	99.1	GSM67087	Arabidopsis_Stigma03	GSE3056	Arabidopsis Pollination Study

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.054 3 GO:0006260 The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
0.048 2 GO:0010182 The process by which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes.
0.038 2 GO:0009873 A series of molecular signals mediated by ethylene (ethene).

SF	Genes	GO ID	Process Name
0.054	3	GO:0006260	The process whereby new strands of DNA are synthesized. The template for replication can either be an existing DNA molecule or RNA.
0.048	2	GO:0010182	The process by which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes.
0.038	2	GO:0009873	A series of molecular signals mediated by ethylene (ethene).

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG
0.031 1 00072 Synthesis and degradation of ketone bodies
0.024 1 00650 Butanoate metabolism
0.022 1 00510 N-Glycan biosynthesis

SF	Genes	KEGG ID	Pathway name
0.031	1	00072	Synthesis and degradation of ketone bodies
0.024	1	00650	Butanoate metabolism
0.022	1	00510	N-Glycan biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g37060
Gene name	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)
Module size	62 genes
NF	0.57
%ile	79.1

Co-expression analysis

Gene ID At2g37060 Gene name NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) Module size 62 genes NF 0.57 %ile 79.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG0.031100072Synthesis and degradation of ketone bodies0.024100650Butanoate metabolism0.022100510N-Glycan biosynthesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g37060

Gene name NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)

Module size 62 genes

NF 0.57

%ile 79.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG
0.031 1 00072 Synthesis and degradation of ketone bodies
0.024 1 00650 Butanoate metabolism
0.022 1 00510 N-Glycan biosynthesis

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays