CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g35970

Gene name harpin-induced family protein / HIN1 family protein / harpin-responsive family protein

Module size 34 genes

NF 0.67

%ile 87.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.71 84.2 1.00 At2g35970 818170 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.80 89.8 0.90 At1g18050 838385 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein F:RNA binding;P:RNA processing;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.78 88.6 0.90 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.78 88.6 0.88 At5g37860 833764 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFM O.I. H.G. S.X.
0.77 88.0 0.89 At2g33010 817863 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.77 88.0 0.89 At2g13640 815849 Golgi GDP mannose transporter (GONST1) F:unknown;P:transcription;C:nucleus;OMBPFVA O.I. H.G. S.X.
0.75 86.9 0.90 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.75 86.9 0.90 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. O.I. H.G. S.X.
0.73 85.5 0.91 At3g28280 822454 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.73 85.5 0.89 At5g44330 834458 male sterility MS5 family protein F:binding;P:biological_process unknown;C:unknown;POBA O.I. H.G. S.X.
0.71 84.2 0.90 At5g40130 3771383 - F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.71 84.2 0.87 At2g30430 817594 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.71 84.2 0.88 At2g34580 818022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV O.I. H.G. S.X.
0.70 83.5 0.89 At1g46912 841119 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.69 82.9 0.88 At4g16050 827290 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. H.G. S.X.
0.69 82.9 0.90 At1g52430 841674 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF O.I. H.G. S.X.
0.69 82.9 0.89 At5g66370 836769 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. H.G. S.X.
0.68 82.2 0.89 At1g09410 837463 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. H.G. S.X.
0.68 82.2 0.89 At1g50680 841490 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV O.I. H.G. S.X.
0.68 82.2 0.90 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB O.I. H.G. S.X.
0.67 81.6 0.89 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.67 81.6 0.88 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.66 80.1 0.89 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.65 79.6 0.89 At1g33820 840277 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBP O.I. H.G. S.X.
0.64 78.9 0.88 At4g23580 828458 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF O.I. H.G. S.X.
0.64 78.9 0.88 At2g33160 817877 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA O.I. H.G. S.X.
0.64 78.9 0.87 At5g14560 831307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.62 77.3 0.89 At2g01500 814678 PFS2 (PRETTY FEW SEEDS 2) PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. O.I. H.G. S.X.
0.62 77.3 0.89 At3g22340 3768898 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.59 74.7 0.88 At1g65120 842819 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV O.I. H.G. S.X.
0.54 69.5 0.88 At3g45570 823699 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.54 69.5 0.88 At4g08450 826403 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;BPOMFVA O.I. H.G. S.X.
0.53 68.6 0.90 At3g19070 821441 cell wall protein-related F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA O.I. H.G. S.X.
0.50 65.3 0.92 At2g07737 3768151 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.71	84.2	1.00	At2g35970	818170	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.80	89.8	0.90	At1g18050	838385	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	F:RNA binding;P:RNA processing;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.78	88.6	0.90	At4g25510	828655	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.78	88.6	0.88	At5g37860	833764	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFM	O.I.	H.G.	S.X.
0.77	88.0	0.89	At2g33010	817863	ubiquitin-associated (UBA)/TS-N domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	H.G.	S.X.
0.77	88.0	0.89	At2g13640	815849	Golgi GDP mannose transporter (GONST1)	F:unknown;P:transcription;C:nucleus;OMBPFVA	O.I.	H.G.	S.X.
0.75	86.9	0.90	At3g57900	824959	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.75	86.9	0.90	At4g02970	828121	AT7SL-1 (Arabidopsis 7SL RNA 1)	Signal recognition particle. Type 4 of RNA polymerase III dependent genes.	O.I.	H.G.	S.X.
0.73	85.5	0.91	At3g28280	822454	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.73	85.5	0.89	At5g44330	834458	male sterility MS5 family protein	F:binding;P:biological_process unknown;C:unknown;POBA	O.I.	H.G.	S.X.
0.71	84.2	0.90	At5g40130	3771383	-	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.71	84.2	0.87	At2g30430	817594	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.71	84.2	0.88	At2g34580	818022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV	O.I.	H.G.	S.X.
0.70	83.5	0.89	At1g46912	841119	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.69	82.9	0.88	At4g16050	827290	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	H.G.	S.X.
0.69	82.9	0.90	At1g52430	841674	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF	O.I.	H.G.	S.X.
0.69	82.9	0.89	At5g66370	836769	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	H.G.	S.X.
0.68	82.2	0.89	At1g09410	837463	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	H.G.	S.X.
0.68	82.2	0.89	At1g50680	841490	AP2 domain-containing transcription factor, putative	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POV	O.I.	H.G.	S.X.
0.68	82.2	0.90	At5g38500	833838	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB	O.I.	H.G.	S.X.
0.67	81.6	0.89	At2g40440	818638	BTB/POZ domain-containing protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.67	81.6	0.88	At1g29730	839851	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	H.G.	S.X.
0.66	80.1	0.89	At5g18160	831934	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.65	79.6	0.89	At1g33820	840277	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBP	O.I.	H.G.	S.X.
0.64	78.9	0.88	At4g23580	828458	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF	O.I.	H.G.	S.X.
0.64	78.9	0.88	At2g33160	817877	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA	O.I.	H.G.	S.X.
0.64	78.9	0.87	At5g14560	831307	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.62	77.3	0.89	At2g01500	814678	PFS2 (PRETTY FEW SEEDS 2)	PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.	O.I.	H.G.	S.X.
0.62	77.3	0.89	At3g22340	3768898	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.
0.59	74.7	0.88	At1g65120	842819	ubiquitin carboxyl-terminal hydrolase-related	F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV	O.I.	H.G.	S.X.
0.54	69.5	0.88	At3g45570	823699	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.54	69.5	0.88	At4g08450	826403	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;BPOMFVA	O.I.	H.G.	S.X.
0.53	68.6	0.90	At3g19070	821441	cell wall protein-related	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA	O.I.	H.G.	S.X.
0.50	65.3	0.92	At2g07737	3768151	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
50.1 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.5 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
48.0 99.8 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
44.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.3 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
42.9 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.8 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.7 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.4 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.6 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
38.4 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.8 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.7 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.6 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.4 99.7 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.3 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.3 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.7 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.9 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.1 99.7 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.6 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
30.5 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.8 99.7 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.7 99.7 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
22.0 99.6 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
20.9 99.6 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
18.1 99.5 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
17.5 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.5 99.5 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
17.2 99.5 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
16.3 99.5 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
15.8 99.5 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.8 99.5 E-MEXP-1138-raw-cel-1432773258
15.7 99.5 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.7 99.5 E-MEXP-1138-raw-cel-1432773290
14.6 99.4 E-MEXP-1138-raw-cel-1432773322
12.3 99.3 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.7 99.3 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
11.4 99.3 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
10.2 99.2 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
9.9 99.1 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.8 99.1 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.8 99.1 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
9.5 99.1 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2 99.1 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
9.0 99.1 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
8.8 99.0 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
8.6 99.0 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
50.1	99.8	GSM253645	High_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.5	99.8	GSM253648	Col-0-1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
48.0	99.8	GSM284393	Arabidopsis GCE2	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
44.3	99.8	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.3	99.8	GSM133762	Lindsey_1-14_torpedo-root_Rep1_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
42.9	99.8	GSM143302	Ts_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.8	99.8	GSM205364	met1-3_leaf_second-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.7	99.8	GSM143310	Tsu_genomic_hyb_1	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.4	99.8	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.6	99.8	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.5	99.8	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.4	99.8	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
39.4	99.8	GSM184556	Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
38.4	99.8	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3	99.8	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.8	99.8	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.7	99.7	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7	99.7	GSM205428	met1-3_leaf_fourth-selfed generation_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.6	99.7	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.4	99.7	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.3	99.7	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
35.3	99.7	GSM184551	Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
34.7	99.7	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.9	99.7	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
33.1	99.7	GSM205430	met1-3_leaf_fourth-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
30.6	99.7	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
30.5	99.7	GSM205426	met1-3_leaf_second-selfed generation_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.8	99.7	GSM284392	Arabidopsis GCE1	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
28.7	99.7	GSM284394	Arabidopsis GCE3	GSE11262	Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
22.0	99.6	GSM270870	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
20.9	99.6	GSM131707	ATGE_84_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
18.1	99.5	GSM176876	AWP_AL_Txed_1	GSE7334	Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
17.5	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.5	99.5	GSM131708	ATGE_84_D	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
17.2	99.5	GSM131706	ATGE_84_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
16.3	99.5	GSM270868	Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2	GSE10719	Response of Arabidopsis cell culture to phytoprostane A1
15.8	99.5	GSM184537	Whole roots 2hr KCl control treated then frozen, biological rep1	GSE7631	Cell-specific nitrogen responses in the Arabidopsis root
15.8	99.5	E-MEXP-1138-raw-cel-1432773258
15.7	99.5	GSM133766	Lindsey_1-18_torpedo-root_Rep3_ATH1	GSE5730	Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.7	99.5	E-MEXP-1138-raw-cel-1432773290
14.6	99.4	E-MEXP-1138-raw-cel-1432773322
12.3	99.3	GSM131703	ATGE_83_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.7	99.3	GSM131705	ATGE_83_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
11.4	99.3	GSM131704	ATGE_83_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
10.2	99.2	GSM147966	lec1-1 Globular Stage Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
9.9	99.1	GSM142634	MC002_ATH1_A4.3-dubos-6kc	GSE6151	The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.8	99.1	GSM131701	ATGE_82_B	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.8	99.1	GSM10480	lec1-1 Cotyledon Stage Seed 2	GSE1051	Seed development in LEAFY COTYLEDON1 mutants
9.5	99.1	GSM106916	opr3_JA_22 hrs_Rep2	GSE4733	Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
9.2	99.1	GSM131702	ATGE_82_C	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
9.0	99.1	GSM131700	ATGE_82_A	GSE5634	AtGenExpress: Developmental series (siliques and seeds)
8.8	99.0	GSM147964	WT Globular Stage Seed 2	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle
8.6	99.0	GSM147963	WT Globular Stage Seed 1	GSE680	Transcript Profiling of Arabidopsis Plant Life Cycle

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.056 1 GO:0048314 The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.
0.056 1 GO:0048446 The process by which the anatomical structures of the petal are generated and organized. Morphogenesis pertains to the creation of form.
0.056 1 GO:0048482 The process by which the anatomical structures of the ovule are generated and organized. Morphogenesis pertains to the creation of form. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.

SF	Genes	GO ID	Process Name
0.056	1	GO:0048314	The process by which the anatomical structures of the embryo sac are generated and organized. Morphogenesis pertains to the creation of form. The embryo sac develops from the megaspore in heterosporous plants.
0.056	1	GO:0048446	The process by which the anatomical structures of the petal are generated and organized. Morphogenesis pertains to the creation of form.
0.056	1	GO:0048482	The process by which the anatomical structures of the ovule are generated and organized. Morphogenesis pertains to the creation of form. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	At2g35970
Gene name	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein
Module size	34 genes
NF	0.67
%ile	87.1

Co-expression analysis

Gene ID At2g35970 Gene name harpin-induced family protein / HIN1 family protein / harpin-responsive family protein Module size 34 genes NF 0.67 %ile 87.1

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g35970

Gene name harpin-induced family protein / HIN1 family protein / harpin-responsive family protein

Module size 34 genes

NF 0.67

%ile 87.1

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays