Co-expression analysis

Gene ID At2g34150
Gene name WAVE1
Module size 70 genes
NF 0.26
%ile 28.3



Co-expression network

pink confeito: Transcription factor, green bicone: Binding protein, red cone: Enzyme protein, blue sphere: Other protein
large node: VF over 0.50, middle node: over 0.25, small node: below 0.25



Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
1.00100.01.00At2g34150817976WAVE1Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.O.I.H.G.S.X.
0.4457.20.86At4g11450826749unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PMOO.I.H.G.S.X.
0.4050.80.86At5g64970836621mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane, plastid;MFPOO.I.H.G.S.X.
0.4050.80.86At1g13170837875ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D)F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOPO.I.H.G.S.X.
0.3846.70.87At5g04270830306zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.3846.70.85At5g15790831435zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFVO.I.H.G.S.X.
0.3745.00.86At3g03690821186UNE7 (unfertilized embryo sac 7)F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, double fertilization forming a zygote and endosperm, pollen tube development;C:endomembrane system, membrane;MPBVOO.I.H.G.S.X.
0.3745.00.85At4g37630829917CYCD5core cell cycle genesO.I.H.G.S.X.
0.3745.00.85At4g31150829243endonuclease V family proteinF:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPFO.I.H.G.S.X.
0.3643.60.85At2g17970816307oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.H.G.S.X.
0.3643.60.85At1g08840837406emb2411 (embryo defective 2411)F:ATP-dependent DNA helicase activity, DNA binding, ATP binding;P:embryonic development ending in seed dormancy, DNA replication;C:chloroplast;MBOFPAVO.I.H.G.S.X.
0.3643.60.86At2g31340817692emb1381 (embryo defective 1381)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.60.85At5g45370834573nodulin-related / integral membrane family proteinF:unknown;P:unknown;C:membrane;BOPAMFO.I.H.G.S.X.
0.3541.60.85At5g45300834566BMY2 (BETA-AMYLASE 2)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOFO.I.H.G.S.X.
0.3541.60.85At1g04010839335phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferaseF:phosphatidylcholine-sterol O-acyltransferase activity, phosphatidylethanolamine-sterol O-acyltransferase activity, phosphatidate-sterol O-acyltransferase activity;P:sterol esterification, lipid metabolic process;C:microsome;MPFOO.I.H.G.S.X.
0.3439.80.85At1g08960837416CAX11member of Potassium-dependent sodium-calcium exchanger like-familyO.I.H.G.S.X.
0.3439.80.84At4g23440828443nucleoside-triphosphatase/ nucleotide binding / transmembrane receptorF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding;P:signal transduction, innate immune response;C:plasma membrane;BPFOMAO.I.H.G.S.X.
0.3439.80.85At5g05310830413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.H.G.S.X.
0.3439.80.84At4g19490827690protein bindingPutative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system.O.I.H.G.S.X.
0.3439.80.86At5g17410831607tubulin family proteinF:unknown;P:microtubule cytoskeleton organization;C:spindle pole, microtubule organizing center;MFOPO.I.H.G.S.X.
0.3338.10.84At2g27340817277-F:molecular_function unknown;P:biological_process unknown;C:unknown;FMOBPO.I.H.G.S.X.
0.3338.10.86At4g38180829974FRS5 (FAR1-related sequence 5)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFAOMO.I.H.G.S.X.
0.3235.70.85At4g18600827594WAVE5Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.O.I.H.G.S.X.
0.3235.70.85At3g63290825504unknown proteinF:molecular_function unknown;P:pollen development;C:cellular_component unknown;FPOBO.I.H.G.S.X.
0.3235.70.85At1g30970839984SUF4 (suppressor of FRIGIDA4)Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.O.I.H.G.S.X.
0.3235.70.84At4g16320--O.I.H.G.S.X.
0.3032.10.84At1g57600842136membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:membrane;BOMFPO.I.H.G.S.X.
0.3032.10.86At5g48520834908unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;MOPFBO.I.H.G.S.X.
0.2930.30.85At3g05040819666HST (HASTY)Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.O.I.H.G.S.X.
0.2930.30.87At2g20240816543unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.H.G.S.X.
0.2930.30.85At2g32760817836unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.2830.30.85At1g77080844042--O.I.H.G.S.X.
0.2830.30.85At1g73970843735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.2830.30.84At3g19570821494unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.H.G.S.X.
0.2830.30.85At1g48380841258RHL1 (ROOT HAIRLESS 1)Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.O.I.H.G.S.X.
0.2830.30.85At5g35520833516MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.O.I.H.G.S.X.
0.2726.20.84At5g46850834729-F:molecular_function unknown;P:GPI anchor biosynthetic process;C:endoplasmic reticulum membrane;MPFOO.I.H.G.S.X.
0.2726.20.84At2g22530816786catalytic/ transferaseF:transferase activity, catalytic activity;P:metabolic process, phospholipid biosynthetic process;C:endomembrane system;MFOBPAO.I.H.G.S.X.
0.2726.20.87At5g11040830971-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2624.40.84At5g06940830585leucine-rich repeat family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.H.G.S.X.
0.2624.40.85At1g76950844030PRAF1F:chromatin binding, zinc ion binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAVO.I.H.G.S.X.
0.2624.40.85At1g16020838172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2522.60.85At5g41060834108zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:plasma membrane;MOFPO.I.H.G.S.X.
0.2522.60.84At1g02960839363unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMPFBO.I.H.G.S.X.
0.2420.70.85At5g41480834149GLA1 (GLOBULAR ARREST1)Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.O.I.H.G.S.X.
0.2319.30.86At5g02410831764DIE2/ALG10 familyF:transferase activity, transferring hexosyl groups;P:biological_process unknown;C:endomembrane system, integral to membrane;FMOPO.I.H.G.S.X.
0.2319.30.85At1g11060837647unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFO.I.H.G.S.X.
0.2217.50.85At3g15940820838glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:chloroplast;BOAPMFO.I.H.G.S.X.
0.2115.80.84At4g35870829741-F:molecular_function unknown;P:protein targeting to vacuole;C:membrane;MPFOO.I.H.G.S.X.
0.2115.80.84At3g03810821131EDA30 (embryo sac development arrest 30)F:molecular_function unknown;P:N-terminal protein myristoylation, polar nucleus fusion, pollen tube development;C:chloroplast;PO.I.H.G.S.X.
0.2115.80.85At3g19460821480reticulon family protein (RTNLB11)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFO.I.H.G.S.X.
0.2115.80.86At2g35100818076ARAD1 (ARABINAN DEFICIENT 1)Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.O.I.H.G.S.X.
0.2014.40.85At3g27320822351hydrolaseF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVO.I.H.G.S.X.
0.2014.40.84At3g60630825234scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POBMO.I.H.G.S.X.
0.2014.40.85At4g25840828690GPP1 (glycerol-3-phosphatase 1)F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.1912.70.84At2g40070818595-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAO.I.H.G.S.X.
0.1811.40.85At3g55480824714adaptin family proteinF:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOPO.I.H.G.S.X.
0.1710.20.85At1g10870837629AGD4 (ARF-GAP domain 4)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.O.I.H.G.S.X.
0.1710.20.85At3g60740825245TTN1 (TITAN 1)Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.O.I.H.G.S.X.
0.157.80.85At1g34550840358EMB2756 (EMBRYO DEFECTIVE 2756)F:unknown;P:embryonic development ending in seed dormancy, response to cadmium ion;C:unknown;OPMFBAO.I.H.G.S.X.
0.157.80.84At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.157.80.85At4g09630826549-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVAO.I.H.G.S.X.
0.146.80.84At5g09740830834HAM2 (histone acetyltransferase of the MYST family 2)Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.O.I.H.G.S.X.
0.146.80.84At2g30800817631HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family.O.I.H.G.S.X.
0.146.80.85At3g56740824841ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOBO.I.H.G.S.X.
0.146.80.86At2g46225819230ABIL1 (Abi-1-like 1)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.O.I.H.G.S.X.
0.135.80.84At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.O.I.H.G.S.X.
0.124.90.84At1g08750837397GPI-anchor transamidase, putativeF:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFABO.I.H.G.S.X.
0.124.90.86At1g55130841956endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFBO.I.H.G.S.X.
0.103.40.84At3g59770825146SAC9Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.O.I.H.G.S.X.

Click More genes

Link to AtGenExpress Visualization Tool



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
53.899.8GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
53.699.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
53.299.8GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.999.8GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
51.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
48.599.8GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
44.299.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
42.899.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.799.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
41.599.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
41.299.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
40.799.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
40.399.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.799.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
39.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
39.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
38.099.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
37.999.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1Link to GEO
35.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG MethylationLink to GEO
35.199.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
34.599.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1Link to GEO
24.499.6GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissuesLink to GEO
22.099.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
20.099.6GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
18.399.5E-MEXP-1725-raw-cel-1669614623
18.199.5GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.Link to GEO
16.699.5GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
16.099.5E-MEXP-1725-raw-cel-1669614634
13.999.4GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular functionLink to GEO
12.299.3E-MEXP-1725-raw-cel-1669614562
10.999.2GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stageLink to GEO
10.799.2GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis rootLink to GEO
10.799.2E-MEXP-98-raw-cel-320188914
10.399.2E-MEXP-1725-raw-cel-1669614582

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0573GO:0009910Any process that stops, prevents or reduces the frequency, rate or extent of flower development.Link to AmiGO
0.0452GO:0000226A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.Link to AmiGO
0.0442GO:0048868The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure.Link to AmiGO

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG
0.026100790Folate biosynthesisLink to KEGG PATHWAY
0.025100563Glycosylphosphatidylinositol(GPI)-anchor biosynthesisLink to KEGG PATHWAY
0.020100510N-Glycan biosynthesisLink to KEGG PATHWAY

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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