CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID At2g32870

Gene name meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Module size 5 genes

NF 0.39

%ile 53.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. O.I. H.G. S.X. Other DB
0.46 59.8 1.00 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. H.G. S.X.
0.60 75.7 0.76 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. H.G. S.X.
0.47 61.2 0.75 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.33 38.1 0.73 At2g32860 817847 BGLU33 (BETA GLUCOSIDASE 33) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. H.G. S.X.
0.23 19.3 0.77 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	O.I.	H.G.	S.X.
0.46	59.8	1.00	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	H.G.	S.X.
0.60	75.7	0.76	At2g39850	818572	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	H.G.	S.X.
0.47	61.2	0.75	At1g67865	843114	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.33	38.1	0.73	At2g32860	817847	BGLU33 (BETA GLUCOSIDASE 33)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	H.G.	S.X.
0.23	19.3	0.77	At1g67870	843115	glycine-rich protein	F:unknown;P:biological_process unknown;C:unknown;MOBPFAV	O.I.	H.G.	S.X.

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
81.9 99.9 GSM131585 ATGE_34_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
69.1 99.9 GSM131586 ATGE_34_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
63.3 99.8 GSM131587 ATGE_34_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
48.8 99.8 GSM133818 Yang_1-3_young-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
35.3 99.7 E-MEXP-1451-raw-cel-1585200202
34.2 99.7 E-MEXP-1451-raw-cel-1585200234
32.8 99.7 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
31.5 99.7 E-MEXP-1451-raw-cel-1585200266
31.1 99.7 E-MEXP-1451-raw-cel-1585200170
27.8 99.7 E-MEXP-1451-raw-cel-1585200298
24.0 99.6 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
21.5 99.6 GSM131615 ATGE_53_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
20.3 99.6 E-MEXP-1451-raw-cel-1585200362
19.9 99.6 GSM62698 arf6/arf6 ARF8/arf8 flowers_stage 1-10 GSE2848 Auxin Response Factor mediated flower gene expression
18.7 99.5 E-MEXP-1443-raw-cel-1581869515
18.3 99.5 GSM131617 ATGE_53_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.6 99.5 E-MEXP-265-raw-cel-414617695
17.6 99.5 GSM131616 ATGE_53_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.2 99.5 GSM62699 arf6/arf6 ARF8/arf8 flowers_stage 11-12 GSE2848 Auxin Response Factor mediated flower gene expression
16.6 99.5 E-MEXP-265-raw-cel-414619001
16.5 99.5 E-MEXP-1451-raw-cel-1585200330
15.8 99.5 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.1 99.4 E-MEXP-1592-raw-cel-1617526960
13.4 99.4 E-MEXP-265-raw-cel-414617783
13.0 99.4 GSM232889 Wt.3-1.0 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
12.5 99.3 E-MEXP-265-raw-cel-414618900
11.4 99.3 E-MEXP-265-raw-cel-414619106
11.0 99.2 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.9 99.2 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.8 99.2 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6 99.2 GSM62695 Columbia flowers_stage 11-12 GSE2848 Auxin Response Factor mediated flower gene expression
10.5 99.2 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.4 99.2 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.2 99.2 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.7 99.1 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.5 99.1 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.1 99.1 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.1 99.1 E-MEXP-265-raw-cel-414619318
9.1 99.1 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0 99.1 GSM131584 ATGE_33_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
9.0 99.1 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.0 99.1 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.7 99.0 E-MEXP-265-raw-cel-414617890
8.6 99.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
81.9	99.9	GSM131585	ATGE_34_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
69.1	99.9	GSM131586	ATGE_34_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
63.3	99.8	GSM131587	ATGE_34_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
48.8	99.8	GSM133818	Yang_1-3_young-pod_Rep2_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
35.3	99.7	E-MEXP-1451-raw-cel-1585200202
34.2	99.7	E-MEXP-1451-raw-cel-1585200234
32.8	99.7	GSM133820	Yang_1-5_young-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
31.5	99.7	E-MEXP-1451-raw-cel-1585200266
31.1	99.7	E-MEXP-1451-raw-cel-1585200170
27.8	99.7	E-MEXP-1451-raw-cel-1585200298
24.0	99.6	GSM133821	Yang_1-6_old-pod_Rep3_ATH1	GSE5736	To identify changes in gene expression during silique senescence in Arabidopsis thaliana
21.5	99.6	GSM131615	ATGE_53_A	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
20.3	99.6	E-MEXP-1451-raw-cel-1585200362
19.9	99.6	GSM62698	arf6/arf6 ARF8/arf8 flowers_stage 1-10	GSE2848	Auxin Response Factor mediated flower gene expression
18.7	99.5	E-MEXP-1443-raw-cel-1581869515
18.3	99.5	GSM131617	ATGE_53_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.6	99.5	E-MEXP-265-raw-cel-414617695
17.6	99.5	GSM131616	ATGE_53_B	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
17.2	99.5	GSM62699	arf6/arf6 ARF8/arf8 flowers_stage 11-12	GSE2848	Auxin Response Factor mediated flower gene expression
16.6	99.5	E-MEXP-265-raw-cel-414619001
16.5	99.5	E-MEXP-1451-raw-cel-1585200330
15.8	99.5	GSM205432	Col_ leaf_ wildtype_rep01	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
14.1	99.4	E-MEXP-1592-raw-cel-1617526960
13.4	99.4	E-MEXP-265-raw-cel-414617783
13.0	99.4	GSM232889	Wt.3-1.0	GSE9201	Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
12.5	99.3	E-MEXP-265-raw-cel-414618900
11.4	99.3	E-MEXP-265-raw-cel-414619106
11.0	99.2	GSM253651	Ler 1	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.9	99.2	GSM253650	Ler 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.8	99.2	GSM143309	Tsu_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.6	99.2	GSM62695	Columbia flowers_stage 11-12	GSE2848	Auxin Response Factor mediated flower gene expression
10.5	99.2	GSM253647	Col-0 3	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
10.4	99.2	GSM143308	Tsu_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
10.2	99.2	GSM143306	High_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.7	99.1	GSM143301	Ts_genomic_hyb_2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.5	99.1	GSM253646	Low_Mo_seg_pool_Ler_col_F2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.1	99.1	GSM253652	Ler 2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
9.1	99.1	E-MEXP-265-raw-cel-414619318
9.1	99.1	GSM143300	Ts_genomic_hyb_3	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0	99.1	GSM131584	ATGE_33_C	GSE5632	AtGenExpress: Developmental series (flowers and pollen)
9.0	99.1	GSM205435	Col_ leaf_ wildtype_rep02	GSE8279	Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
9.0	99.1	GSM143299	High_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9	99.0	GSM143298	Low_Na_seg_pool_ts_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9	99.0	GSM253649	Col-0-2	GSE10039	Low_Mo_Arabidopsis_mapping_MOT1
8.7	99.0	E-MEXP-265-raw-cel-414617890
8.6	99.0	GSM143307	Low_Na_seg_pool_tsu_col_F2	GSE6203	Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.038 1 GO:0043086 Any process that stops or reduces the activity of an enzyme.
0.023 1 GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.038	1	GO:0043086	Any process that stops or reduces the activity of an enzyme.
0.023	1	GO:0050832	Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.

KEGG PATHWAY inferred to related to the module

SF Genes KEGG ID Pathway name Link to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	At2g32870
Gene name	meprin and TRAF homology domain-containing protein / MATH domain-containing protein
Module size	5 genes
NF	0.39
%ile	53.8

Co-expression analysis

Gene ID At2g32870 Gene name meprin and TRAF homology domain-containing protein / MATH domain-containing protein Module size 5 genes NF 0.39 %ile 53.8

Co-expression network

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein: VF over 0.50, : over 0.25, : below 0.25

Co-expressed genes

Click More genes

Link to AtGenExpress Visualization Tool

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0381GO:0043086Any process that stops or reduces the activity of an enzyme.0.0231GO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.

KEGG PATHWAY inferred to related to the module

SFGenesKEGG IDPathway nameLink to KEGG

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID At2g32870

Gene name meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Module size 5 genes

NF 0.39

%ile 53.8

: Transcription factor, : Binding protein, : Enzyme protein, : Other protein
: VF over 0.50, : over 0.25, : below 0.25

SF Genes GO ID Process Name Link to AmiGO
0.038 1 GO:0043086 Any process that stops or reduces the activity of an enzyme.
0.023 1 GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.

SF Genes KEGG ID Pathway name Link to KEGG

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays